Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03667 ATGAGAGGATTGGTAAGCCGTGAGAACATGTTGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGGAAGCACATCTAAGCGAAGTGCAGAAAGCAAGCTTCGGCTCAGTCGAACAAAGTCACATATTGCTCCAGATGTTCTTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCACAAGAATTGCTTTTTGACATAATCCAGAGGGTTGAAGAGAGTGAAACATCTTGGCCTGACCGAGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCTTGGAGGTCGATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCACGTGATTCTCCAATACAATGCTTTATAAGGAGGAACAAAGAAAGTTCTACATATCTCTTGTACTTTGGTCTGGTACCATCAGAGAATGACAATAACAAGTTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTATCATATCCTTGGCCACAGATGATTTTTCTCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCCAATTTTTTGGGTACCAAGTTCACCATATATGACAGCCAACCTCCCCATGATGCTGCAATTCAACAAAATTGTCAATCTAGTAGAAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTATCTTGTTAGCACAGTTTCCTACGAGCTGAACGTCCTTTGCACTAGAGGGCCGAGAAGAATGCATTGTGTCATGAACTCTATTCCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCGACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAGCAGCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACTAATATCGACCCAAGTTTCAACTGAGCAATTAGAACTGAAAAACAAGGCTCCACGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAATTTCAAGGGCCGTGTGTCTGTGGCTTCTGTTAAAAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAACGTTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAATTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCGCTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGTAGCTTTGACACTAAACCAGCCTGTGAATGA 1272 0.4285 MRGLVSRENMLLRSIVRELKEMRDGIGSTSKRSAESKLRLSRTKSHIAPDVLATTFEFIQQGQWANLPQELLFDIIQRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKESSTYLLYFGLVPSENDNNKLLLAAKRIRRATGTDFIISLATDDFSRASNKYVGKLRSNFLGTKFTIYDSQPPHDAAIQQNCQSSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSPSPAAKEKVPVPDLNSASLSEPLISTQVSTEQLELKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNVSAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03667 423 CDD F-box_AtTLP-like 64 108 - -
Viun3g03667 423 Gene3D Tubby Protein; Chain A 122 423 IPR025659 -
Viun3g03667 423 Pfam Tub family 125 418 IPR000007 -
Viun3g03667 423 SUPERFAMILY F-box domain 60 108 IPR036047 GO:0005515
Viun3g03667 423 PANTHER TUBBY-RELATED 51 421 - -
Viun3g03667 423 Pfam F-box domain 64 111 IPR001810 GO:0005515
Viun3g03667 423 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Viun3g03667 423 SUPERFAMILY Tubby C-terminal domain-like 113 423 IPR025659 -
Viun3g03667 423 Gene3D - 57 110 - -
Viun3g03667 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Viun3g03667 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 179 195 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Viun3g03667 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03667 Viun-Chr3 43530381 43538197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03667 10 423 TUB Transcription Factor Family AT2G18280 62.053 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun3g03667 Tub 1.7e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03667 K19600 - gmx:100805380 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03667 3 43530381 43538197 Viun3g03667 3 43530381 43538197 ECH
Viun3g03667 3 43530381 43538197 Viun2g01956 2 28146642 28149696 ECH
Viun2g01956 2 28146642 28149696 Viun3g03667 3 43530381 43538197 PCT