Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03640 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGTTCAGTCTATAACTTCTCCAACCCCACCACCTCACTCTAAACCTTCCATCACCACCACTCATCAATCATGGATCCCAAGCAACATATACAATGGTTGTAATAACAGTGGCTTTCTAACCGAGAGCTTTACAAATTCAAGAGAAGTACAGCACAAGCACGCCATGACTGATTCACTTAGAATCTCAACAAGGCAAGCTTTGGGTTTCCACAATGGAAAAAGCCTTGCTCAACAGCCAGTTAGTGATCTCTTTGCAGCAAGAATCAAAGGTGAAATGATGAACACCTCCATGAAGGCTATGGAGGAATCATGTTCACTAATCCCAATTCATGAACAAAAATACCCTCCTAGTTTCTTATCTAGTCTTGGTGTAACTGGTCTAGAGTTTTTTCCTTCGGAGAATGTCTTTCATAATGACAAGACCCTAAGCAAGAGATATAACAACTTTGATGATGCTTGCTTGATTTCGAACTTACCAACCCTAGATATGACCTCATCTTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATCTGCATACAAGTTACAGTGAGGGTTGTGAAATCCAACCTTGCTATGATACTTTTGGTCTAAACGAGAGCATAGCTTTGTGCCACAGCGACATGCATGGCCGCGAAAGTAGTCCATCAAATAGCTCAAAAATTTCATCATTTATAAGTGAAGTTGCAACGACGAAAAGGCCTAGCAGTTTTTCTCTACCAAAAGAATCAGAGGCCAAAGCTAAGAGGTCAAGGACATCATCATGTCCTCCCCTGAAGCAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTAGCACCTTTTGGGAAGACCAGTACAGCCTCTGTCTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGGTGCAGCTGAATACAAATAAAGTGGATAAAGAAGTGAAGCCAAACCTAAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTACGCATCATTTATTCATCGTTGCGTTTAA 1125 0.4071 MEFASFHLQHQLQEESVQSITSPTPPPHSKPSITTTHQSWIPSNIYNGCNNSGFLTESFTNSREVQHKHAMTDSLRISTRQALGFHNGKSLAQQPVSDLFAARIKGEMMNTSMKAMEESCSLIPIHEQKYPPSFLSSLGVTGLEFFPSENVFHNDKTLSKRYNNFDDACLISNLPTLDMTSSLVSCSLGLNPKMFDLHTSYSEGCEIQPCYDTFGLNESIALCHSDMHGRESSPSNSSKISSFISEVATTKRPSSFSLPKESEAKAKRSRTSSCPPLKQIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMVQLNTNKVDKEVKPNLRSRGLCLVPLSYASFIHRCV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03640 374 MobiDBLite consensus disorder prediction 14 36 - -
Viun3g03640 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 368 - -
Viun3g03640 374 MobiDBLite consensus disorder prediction 254 277 - -
Viun3g03640 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 332 IPR036638 GO:0046983
Viun3g03640 374 Gene3D - 267 346 IPR036638 GO:0046983
Viun3g03640 374 CDD bHLH_AtbHLH_like 281 326 IPR045239 -
Viun3g03640 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Viun3g03640 374 SMART finulus 275 324 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03640 Viun-Chr3 43293920 43297513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03640 232 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 48.966 6.96e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03640 - - vum:124832810 658.677