Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03628 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTACCAACAACGAGATTCCTGCAGCCGAGACCCTATTCTGGTACAGCAAAACCGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCAACCGCATGCGCGCCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGCCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCCTTTGTTGCGATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAGAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGTGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAACAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTACCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCCGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGGTGTTGCTGGGGCTCATCAGCCCTTGAACCTCACTGGTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 936 0.531 MAGLFSLGGGRGSNNNQQDNTTNNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMQPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVGVAGAHQPLNLTGSGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03628 311 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 295 IPR007818 GO:0003700|GO:0006355
Viun3g03628 311 Coils Coil 146 169 - -
Viun3g03628 311 MobiDBLite consensus disorder prediction 9 23 - -
Viun3g03628 311 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Viun3g03628 311 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03628 311 Pfam Domain of unknown function (DUF702) 102 238 - -
Viun3g03628 311 MobiDBLite consensus disorder prediction 143 191 - -
Viun3g03628 311 NCBIfam LRP1 C-terminal domain 189 237 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03628 Viun-Chr3 43131516 43134557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03628 1 311 C2H2 Transcription Factor Family AT3G51060 45.600 4.40e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun3g03628 DUF702 6.6e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03628 - - gmx:100789129 444.121