Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03627 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTACCAACAACGAGATTCCTGCAGCCGAGACCCTATTCTGGTACAGCAAAACCGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCAACCGCATGCGCGCCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGCCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCCTTTGTTGCGATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAGAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGTGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAACAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTACCCTCGTCAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCCGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGGTGTTGCTGGGGCTCATCAGCCCTTGAACCTCACTGGTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 933 0.5316 MAGLFSLGGGRGSNNNQQDNTTNNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMQPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVGVAGAHQPLNLTGSGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03627 310 Coils Coil 146 169 - -
Viun3g03627 310 MobiDBLite consensus disorder prediction 9 23 - -
Viun3g03627 310 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Viun3g03627 310 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Viun3g03627 310 Pfam Domain of unknown function (DUF702) 102 237 - -
Viun3g03627 310 NCBIfam LRP1 C-terminal domain 188 236 IPR006511 -
Viun3g03627 310 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03627 310 MobiDBLite consensus disorder prediction 157 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03627 Viun-Chr3 43131516 43134557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03627 1 310 C2H2 Transcription Factor Family AT3G51060 45.867 4.54e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun3g03627 DUF702 1.3e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03627 - - gmx:100789129 446.817