Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03616 ATGGAGTGTTTGGAAGAAGTGTTGAAGAGCAGTTTCAGAAAAGAAATGGCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTGTGACGACTTCTTCGTCGACGACCTCCTCGACTTTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAAACACAGCCACCATTCAACCTCTGTTTCCCCTCACAACAACAACAACCACACCATGCACAATTGCAAACCCTCCTTCAACGACAATTTCAATGCCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACCTGGAATGGGTGTCTCATTTCATCGAAGATTCTTTCTCCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCTGAGAAACCGCCGGAACCGGGAAACGCCGGTTTCACTTTTAAAACCCTCGTTCCGGCGAAGCCAAGGAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCGCTAAGGTCACCCTCGTATTTCACCAACACGTCGTCTCCCTTCAGCCCTTTGCTAATTTGCGCCGCCACGTCCAAAGTCCACCGCCAGCATCCGGAGGACAAGAGGGCGAAGAAACGGGCCGCGTCGGACGGGGGGGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCCCAATGGCGAACCGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAGAAGGAGGCGGAGCCTGGACCGGACACCGGTTCGCCACCGTCGGTTCCCGGTTTTTGA 891 0.5578 MECLEEVLKSSFRKEMALKLSPQAFPEDLNMQNVTSCDDFFVDDLLDFSLLENEEPDQHKHSHHSTSVSPHNNNNHTMHNCKPSFNDNFNAELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLAEKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSYFTNTSSPFSPLLICAATSKVHRQHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAEPGPDTGSPPSVPGF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03616 296 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Viun3g03616 296 MobiDBLite consensus disorder prediction 190 209 - -
Viun3g03616 296 PANTHER GATA TRANSCRIPTION FACTOR 27 290 - -
Viun3g03616 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 270 - -
Viun3g03616 296 MobiDBLite consensus disorder prediction 274 296 - -
Viun3g03616 296 PIRSF Txn_fac_GATA_plant 8 289 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun3g03616 296 FunFam GATA transcription factor 205 287 - -
Viun3g03616 296 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Viun3g03616 296 MobiDBLite consensus disorder prediction 67 83 - -
Viun3g03616 296 SMART GATA_3 208 262 IPR000679 GO:0006355|GO:0043565
Viun3g03616 296 MobiDBLite consensus disorder prediction 56 83 - -
Viun3g03616 296 Gene3D - 210 283 IPR013088 GO:0006355|GO:0008270
Viun3g03616 296 MobiDBLite consensus disorder prediction 190 218 - -
Viun3g03616 296 CDD ZnF_GATA 213 261 IPR000679 GO:0006355|GO:0043565
Viun3g03616 296 Pfam GATA zinc finger 214 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03616 Viun-Chr3 42868754 42870233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03616 5 296 C2C2-Gata Transcription Factor Family AT5G66320 46.628 9.97e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g03616 GATA 4e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03616 3 42868754 42870233 Viun3g03616 3 42868754 42870233 ECH