Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03602 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCGCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGACGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTCTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAAAGATATCTTCTATTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGGCAAAATGCACTACCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCTCTGATTCTGACGCCAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGCCATAA 600 0.4517 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03602 199 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Viun3g03602 199 MobiDBLite consensus disorder prediction 118 143 - -
Viun3g03602 199 CDD Bbox1_BBX-like 19 62 - -
Viun3g03602 199 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Viun3g03602 199 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Viun3g03602 199 CDD Bbox1_BBX-like 71 111 - -
Viun3g03602 199 Gene3D Classic Zinc Finger 16 110 - -
Viun3g03602 199 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Viun3g03602 199 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Viun3g03602 199 SMART bboxneu5 66 111 IPR000315 GO:0008270
Viun3g03602 199 SMART bboxneu5 15 62 IPR000315 GO:0008270
Viun3g03602 199 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 143 - -
Viun3g03602 199 FunFam B-box zinc finger protein 19 17 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03602 Viun-Chr3 42765669 42768704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03602 16 198 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 2.39e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun3g03602 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03602 - - vun:114176173 411.379