Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03601 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCGCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGACGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTCTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAAAGATATCTTCTATTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGGCAAAATGCACTACCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCTCTGATTCTGACGCCAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGTTCTCTGATTGA 606 0.4505 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQFSD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03601 201 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Viun3g03601 201 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Viun3g03601 201 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Viun3g03601 201 MobiDBLite consensus disorder prediction 118 143 - -
Viun3g03601 201 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 143 - -
Viun3g03601 201 CDD Bbox1_BBX-like 19 62 - -
Viun3g03601 201 Gene3D Classic Zinc Finger 16 110 - -
Viun3g03601 201 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Viun3g03601 201 CDD Bbox1_BBX-like 71 111 - -
Viun3g03601 201 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Viun3g03601 201 SMART bboxneu5 66 111 IPR000315 GO:0008270
Viun3g03601 201 SMART bboxneu5 15 62 IPR000315 GO:0008270
Viun3g03601 201 FunFam B-box zinc finger protein 19 17 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03601 Viun-Chr3 42765669 42768856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03601 16 201 C2C2-CO-like Transcription Factor Family AT4G38960 61.828 1.65e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun3g03601 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03601 - - vun:114176173 411.379