Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03600 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCGCTATGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGACGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTCTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAAAGATATCTTCTATTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGGCAAAATGCACTACCCAAAATAAAAATGGGAGAGAAACAGCAAAATCACAGGATGCCTCTGATTCTGACGCCAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTGGAAGTAGAAGTAGCCTTGATTTCCTGCTTTACTTGTCTATCTTTGCAAGACACTGTGATGGCTTATTACACATGTGGAAAATATTGAATTATTGA 693 0.4387 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGDKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLILTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVGSRSSLDFLLYLSIFARHCDGLLHMWKILNY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03600 230 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Viun3g03600 230 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Viun3g03600 230 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Viun3g03600 230 Gene3D Classic Zinc Finger 16 110 - -
Viun3g03600 230 CDD Bbox1_BBX-like 19 62 - -
Viun3g03600 230 FunFam B-box zinc finger protein 19 17 107 - -
Viun3g03600 230 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 158 - -
Viun3g03600 230 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Viun3g03600 230 CDD Bbox1_BBX-like 71 111 - -
Viun3g03600 230 SMART bboxneu5 66 111 IPR000315 GO:0008270
Viun3g03600 230 SMART bboxneu5 15 62 IPR000315 GO:0008270
Viun3g03600 230 MobiDBLite consensus disorder prediction 120 143 - -
Viun3g03600 230 SUPERFAMILY B-box zinc-binding domain 63 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03600 Viun-Chr3 42765669 42769353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03600 16 198 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 6.65e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun3g03600 zf-B_box 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03600 - - vun:114176173 477.633