Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03592 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCCGGAAAAAAGTTGCTTCTCGGAAGATTGATCTTGACGTTATCAAAGAAATAGACCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAATGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACGAACAGAGCTACAATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACTAACGGCCAAACGAAGACCATTGAAGGGTGGGATCGAAGGTACACATACGAGGAACAAGCATGCGGTGTCAACTCTTCGGTTATGTTAAGGCAACCTCAGAGGAACAATATTTCAGCTCAAAATTTGTTGTACAAGAAAGAGACAGACGCAGATAATTTGAGCTTCATGCATGCAGAACAACTGATGCAGCTTCCTCAGCTAGAAAGCCCCTCCATGCCACTAGTGAAGAAGCAAACCTCAGTGTCCCTTATATCAGACAACATTAACAACGATGATGTTTCTCAGAAGGAGTTATCCAACACAAAGAGAGTGACTGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCATGAAATAGAAGAGAGGCATGAAATAGAAGGAGTGTCAAGCTTTGCAGCTCATCATCACACTGGGTCGGACATGGCATTGTTGCTACTCCAGAATAGTAATGAAAGGAACAAGTTCAACCCGTTTCTAAGTGCAGGTTCATCAGACTGTGACATTGGGATATGTGTATTTGAAAAATGA 1008 0.4315 MMESCVPPGFRFHPTDEELVGYYLRKKVASRKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFRKRTNGQTKTIEGWDRRYTYEEQACGVNSSVMLRQPQRNNISAQNLLYKKETDADNLSFMHAEQLMQLPQLESPSMPLVKKQTSVSLISDNINNDDVSQKELSNTKRVTDWRALDKFVASQLSHEIEERHEIEGVSSFAAHHHTGSDMALLLLQNSNERNKFNPFLSAGSSDCDIGICVFEK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03592 335 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Viun3g03592 335 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Viun3g03592 335 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Viun3g03592 335 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Viun3g03592 335 FunFam NAC domain-containing protein 15 159 - -
Viun3g03592 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03592 Viun-Chr3 42697313 42700822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03592 2 334 NAC Transcription Factor Family AT2G18060 58.197 2.31e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g03592 NAM 6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03592 - - gmx:100803726 527.324