Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03590 ATGCGAACACGAAATGCTGATCCTGCTTCCAAATCCGCAACCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCAGCCGCACCCGATTCCAAAACCGATCAATCTCCTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTGCGAAAATGAAGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAATTTGAAAGAACAACGTCAGGCAGTAGCTGATGAAATTCTTATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGGAAGATGTTGAAGTTGTTGATGCAGATAATATTGAGGGTGAGAAAGAGGGGGATCAAGGTATTGAGTTTTCTGAAGATAAGGAACAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGGAGTGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGCTGAAAAGGAGGGAGTGAAGGGAAAGGAAGTGTTCAAAGATGAAGAGAGGGGCAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGGAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGACAGGAAGAATTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTGGATGGGGAGAAAGAAAAGAAAGAGTTGAAAGCACCCGATGGAGAGAAAGGTAAGGAAGAGTTGAAAGAACATGAAGGAGAGAAAGGTAAGGAGGAATTAATAGAATGGGAAGGAGAGAAAGTTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTAAAGTTTGACTTGAAAGAACAGGAAGTAGAAGAAGGGAAGTTGAAAGAACATTATCCAGAGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTAAGTCGCTTGGTCTAGAAGTGAAAGCCCAGATGCAAACAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCCATGAGTGGTGAAAAGATAGATCTTCGAGGACAAGGGAAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGGCGTTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATCTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATTGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGCATTGAAGGTGCTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGTTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTTAAATCTTATGGTGAAATTGTAAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACCCATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATACGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTAGAGGGAGGGGGTTTGGGCGAGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCACGGTGGAAACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCTTGATTTTAATATACATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTAGCCGAGGTGCTTCATTTGCTGGACCGTCTAGACCTTATCAATACAGAGCATGGTATGGTATGCCTGATGGAGGTTCTAGTGAGCCTGTTCCTCCAAGGAGGACCTACTCCCCTGGTGGACAATTTGACATGCCTTTTATGGGAAGACATTTTGATGATCCATATCTATACGATGACAATATACATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGCCCCAATAGACTTCGTCCCCGTTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGTCTGGCAGCAGACAGTACCCGCCTGACTACTATGCTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTGA 2784 0.4404 MRTRNADPASKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSAAPDSKTDQSPVEQKPVASGSSTKTAKMKAPGRPRVKAIDTPNLKEQRQAVADEILIEDKTEAAEKVEDVEVVDADNIEGEKEGDQGIEFSEDKEQKSMEVDEPVVEKGSDIMEVEVTASQDVSVSFQRLGRPIMDLNISADNEDCTAEKEGVKGKEVFKDEERGKGKEKLKEQEGDGGKEEVKVHEGDKGQEELKELEGDKGMEELKELDGEKEKKELKAPDGEKGKEELKEHEGEKGKEELIEWEGEKVKEETIEQEGHKVKFDLKEQEVEEGKLKEHYPEKAEGEETNLFGHEENTKSLGLEVKAQMQTEDANPIKDGGEGPMSGEKIDLRGQGKVELAEEDPEEDPEEDPEEPLDEIGALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGAENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDTASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTRGRGFGRGRQPFNNRGNFNRDRSFYHGGNSQIGRMGFRDDLDFNIHPDFRQRQFGPQGAVRGGHYAGSRGASFAGPSRPYQYRAWYGMPDGGSSEPVPPRRTYSPGGQFDMPFMGRHFDDPYLYDDNIHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGSGSRQYPPDYYASDYGRGSYSSYYGGDGSHGHGYYY 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03590 927 MobiDBLite consensus disorder prediction 316 402 - -
Viun3g03590 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 593 748 - -
Viun3g03590 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 375 502 - -
Viun3g03590 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 593 IPR000504 GO:0003723
Viun3g03590 927 SMART rrm1_1 509 586 IPR000504 GO:0003723
Viun3g03590 927 SMART rrm1_1 607 680 IPR000504 GO:0003723
Viun3g03590 927 SMART rrm1_1 429 502 IPR000504 GO:0003723
Viun3g03590 927 Gene3D - 372 502 IPR012677 -
Viun3g03590 927 SUPERFAMILY RNA-binding domain, RBD 429 573 IPR035979 GO:0003676
Viun3g03590 927 MobiDBLite consensus disorder prediction 714 742 - -
Viun3g03590 927 MobiDBLite consensus disorder prediction 316 339 - -
Viun3g03590 927 MobiDBLite consensus disorder prediction 111 152 - -
Viun3g03590 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 508 592 - -
Viun3g03590 927 CDD RRM_SF 608 682 - -
Viun3g03590 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 606 686 IPR000504 GO:0003723
Viun3g03590 927 CDD RRM_SF 510 573 - -
Viun3g03590 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 506 IPR000504 GO:0003723
Viun3g03590 927 MobiDBLite consensus disorder prediction 386 402 - -
Viun3g03590 927 SUPERFAMILY RNA-binding domain, RBD 597 691 IPR035979 GO:0003676
Viun3g03590 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 578 IPR000504 GO:0003723
Viun3g03590 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 608 675 IPR000504 GO:0003723
Viun3g03590 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 498 IPR000504 GO:0003723
Viun3g03590 927 Gene3D - 507 592 IPR012677 -
Viun3g03590 927 CDD RRM_SF 430 499 - -
Viun3g03590 927 MobiDBLite consensus disorder prediction 48 70 - -
Viun3g03590 927 MobiDBLite consensus disorder prediction 192 287 - -
Viun3g03590 927 Gene3D - 594 753 IPR012677 -
Viun3g03590 927 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 927 - -
Viun3g03590 927 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03590 Viun-Chr3 42677361 42690089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03590 430 674 Eukaryotic Initiation Factors Gene Family AT1G71770 25.194 7.13e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03590 - - gmx:100819035 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03590 3 42677361 42690089 Viun3g03590 3 42677361 42690089 ECH