Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03589 ATGCGAACACGAAATGCTGATCCTGCTTCCAAATCCGCAACCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCAGCCGCACCCGATTCCAAAACCGATCAATCTCCTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTGCGAAAATGAAGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAATTTGAAAGAACAACGTCAGGCAGTAGCTGATGAAATTCTTATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGGAAGATGTTGAAGTTGTTGATGCAGATAATATTGAGGGTGAGAAAGAGGGGGATCAAGGTATTGAGTTTTCTGAAGATAAGGAACAGAAGTCGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGGAGTGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGCTGAAAAGGAGGGAGTGAAGGGAAAGGAAGTGTTCAAAGATGAAGAGAGGGGCAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGGAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGACAGGAAGAATTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTGGATGGGGAGAAAGAAAAGAAAGAGTTGAAAGCACCCGATGGAGAGAAAGGTAAGGAAGAGTTGAAAGAACATGAAGGAGAGAAAGGTAAGGAGGAATTAATAGAATGGGAAGGAGAGAAAGTTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTAAAGTTTGACTTGAAAGAACAGGAAGTAGAAGAAGGGAAGTTGAAAGAACATTATCCAGAGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTAAGTCGCTTGGTCTAGAAGTGAAAGCCCAGATGCAAACAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCCATGAGTGGTGAAAAGATAGATCTTCGAGGACAAGGGAAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGGCGTTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATCTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATTGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGCATTGAAGGTGCTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGTTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTTAAATCTTATGGTGAAATTGTAAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACCCATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATACGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGGAGCTGTGAGGGGTGGACATTATGCTGGTAGCCGAGGTGCTTCATTTGCTGGACCGTCTAGACCTTATCAATACAGAGCATGGTATGGTATGCCTGATGGAGGTTCTAGTGAGCCTGTTCCTCCAAGGAGGACCTACTCCCCTGGTGGACAATTTGACATGCCTTTTATGGGAAGACATTTTGATGATCCATATCTATACGATGACAATATACATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGCCCCAATAGACTTCGTCCCCGTTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGTCTGGCAGCAGACAGTACCCGCCTGACTACTATGCTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTGA 2604 0.4393 MRTRNADPASKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSAAPDSKTDQSPVEQKPVASGSSTKTAKMKAPGRPRVKAIDTPNLKEQRQAVADEILIEDKTEAAEKVEDVEVVDADNIEGEKEGDQGIEFSEDKEQKSMEVDEPVVEKGSDIMEVEVTASQDVSVSFQRLGRPIMDLNISADNEDCTAEKEGVKGKEVFKDEERGKGKEKLKEQEGDGGKEEVKVHEGDKGQEELKELEGDKGMEELKELDGEKEKKELKAPDGEKGKEELKEHEGEKGKEELIEWEGEKVKEETIEQEGHKVKFDLKEQEVEEGKLKEHYPEKAEGEETNLFGHEENTKSLGLEVKAQMQTEDANPIKDGGEGPMSGEKIDLRGQGKVELAEEDPEEDPEEDPEEPLDEIGALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGAENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDTASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPGAVRGGHYAGSRGASFAGPSRPYQYRAWYGMPDGGSSEPVPPRRTYSPGGQFDMPFMGRHFDDPYLYDDNIHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGSGSRQYPPDYYASDYGRGSYSSYYGGDGSHGHGYYY 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03589 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 498 IPR000504 GO:0003723
Viun3g03589 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 578 IPR000504 GO:0003723
Viun3g03589 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 608 675 IPR000504 GO:0003723
Viun3g03589 867 MobiDBLite consensus disorder prediction 316 402 - -
Viun3g03589 867 FunFam Heterogeneous nuclear ribonucleoprotein Q 375 502 - -
Viun3g03589 867 FunFam Heterogeneous nuclear ribonucleoprotein Q 593 730 - -
Viun3g03589 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 593 IPR000504 GO:0003723
Viun3g03589 867 FunFam Heterogeneous nuclear ribonucleoprotein Q 508 592 - -
Viun3g03589 867 SUPERFAMILY RNA-binding domain, RBD 503 576 IPR035979 GO:0003676
Viun3g03589 867 SMART rrm1_1 509 586 IPR000504 GO:0003723
Viun3g03589 867 SMART rrm1_1 607 680 IPR000504 GO:0003723
Viun3g03589 867 SMART rrm1_1 429 502 IPR000504 GO:0003723
Viun3g03589 867 SUPERFAMILY RNA-binding domain, RBD 429 679 IPR035979 GO:0003676
Viun3g03589 867 CDD RRM_SF 430 499 - -
Viun3g03589 867 MobiDBLite consensus disorder prediction 48 70 - -
Viun3g03589 867 MobiDBLite consensus disorder prediction 316 339 - -
Viun3g03589 867 Gene3D - 594 731 IPR012677 -
Viun3g03589 867 Gene3D - 372 505 IPR012677 -
Viun3g03589 867 MobiDBLite consensus disorder prediction 192 287 - -
Viun3g03589 867 CDD RRM_SF 608 682 - -
Viun3g03589 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 606 686 IPR000504 GO:0003723
Viun3g03589 867 Gene3D - 507 592 IPR012677 -
Viun3g03589 867 CDD RRM_SF 510 573 - -
Viun3g03589 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 506 IPR000504 GO:0003723
Viun3g03589 867 MobiDBLite consensus disorder prediction 1 89 - -
Viun3g03589 867 MobiDBLite consensus disorder prediction 386 402 - -
Viun3g03589 867 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 867 - -
Viun3g03589 867 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03589 Viun-Chr3 42677360 42688848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03589 430 674 Eukaryotic Initiation Factors Gene Family AT1G71770 25.194 7.29e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03589 - - gmx:100819035 1168.68