Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03588 ATGAAGCGCGCAAGGAAATCTAACCGGGTTTCGTGGGCCACTGGAGGGAACCTGTGTCAGGTGAAATTGTTTTTGTCGGACGATTCCCCCTCAAAAGTAGGCCAACATTCGCAAGATCATCTTCAAGTAAAGACATCTATGCTAAATTCAAATTCCACTATTAATGATCCTAACGATTTACCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGGGTTGATTTCTCCTGCATTTCCCAGATAAAATGGGAATGTCCTCTGCCGTTTGTTGTCAATCCTGATTGGCGAGTTGTAGCGGGTGAAGAAAGTAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCGAGCCCTTCTGTCTCTTTGGACGTAGAAGAGGAAGACTATGATGATGACTTTACTCCCCTCATCCCTATCATTCCAATTGAAGATGAAGAATCTGTGGATATTTTTCCTGAAGAGGCAGTAGCTGGGAACCCTTTCCCCAATGTGCAGCCGAATAACTCTCTGCAATATATATCTGCTGAAACTTCTATTCGTTCACCCTCAAACGCCTTTTATACTGATTCCTCGGATCCCTGTACAGGGATCCCCTTGGGTGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCGGTTGTTGCAACCATTATGAGGAGCTCTGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCAAAAATGCTCGACAAGTTGATTAATGAACATTCTGCAGCAACCACCACAAGTGCTTACACAAGTACTGGGGATTCCACTCCTGGTGTTAAGCCTGCCGCCACTCCAGTTATGTTGTCTACGTCTACTGATGTGAAAGCTTCTGGGGCTACACCTACAAGTGGAGTGGGTTCATTGCCTTTTGGTCTGAAAACTGCATATCCATCAGTTTCAGTATTGAGTCCTACACCTGACAAGCCAGCCACTCTGCCAGTGCCTGCAGCTCCATCAGTCTCACCGTTCTCTCCGGCTCATGATAATCCAGTTACTGCACCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAATACCCTCAGTTTCATTGCTCACAACTACACATGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAAGTGGTATTTCCCCTACATTAAATACTCAGCCTCAGCAAGATTCAGCTCTGGCATCTGGGCCAAAGCGAGCCGCTGCAATGGCCGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAATCTGCATGCTGTTGTTAATCCGGTGCAATCCCCTGCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTAATCTCCAAGATTTGAAACCGGTACATAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCCTAGGGGCACAGAGTGCAAAAAGATTGAAATTGGGACCATAG 1698 0.4494 MKRARKSNRVSWATGGNLCQVKLFLSDDSPSKVGQHSQDHLQVKTSMLNSNSTINDPNDLPPGFESSHFLKQTRVDFSCISQIKWECPLPFVVNPDWRVVAGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDDFTPLIPIIPIEDEESVDIFPEEAVAGNPFPNVQPNNSLQYISAETSIRSPSNAFYTDSSDPCTGIPLGGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHSAATTTSAYTSTGDSTPGVKPAATPVMLSTSTDVKASGATPTSGVGSLPFGLKTAYPSVSVLSPTPDKPATLPVPAAPSVSPFSPAHDNPVTAPVPLSRPLSGKPGIPSVSLLTTTHASHIPRSVSKQIHHVSSGISPTLNTQPQQDSALASGPKRAAAMAGELSTGPVPSLTRNLHAVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNLQDLKPVHNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAGNILGAQSAKRLKLGP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03588 565 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 564 - -
Viun3g03588 565 ProSiteProfiles Zinc finger C3H1-type profile. 517 544 IPR000571 GO:0046872
Viun3g03588 565 MobiDBLite consensus disorder prediction 386 415 - -
Viun3g03588 565 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03588 Viun-Chr3 42662968 42670329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03588 82 153 Homeobox Transcription Factor Family AT4G02560 41.667 9.80e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g03588 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03588 - - pvu:PHAVU_003G260700g 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03588 3 42662968 42670329 Viun3g03588 3 42662968 42670329 ECH