Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03587 ATGCTAAATTCAAATTCCACTATTAATGATCCTAACGATTTACCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGGGTTGATTTCTCCTGCATTTCCCAGATAAAATGGGAATGTCCTCTGCCGTTTGTTGTCAATCCTGATTGGCGAGTTGTAGCGGGTGAAGAAAGTAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCGAGCCCTTCTGTCTCTTTGGACGTAGAAGAGGAAGACTATGATGATGACTTTACTCCCCTCATCCCTATCATTCCAATTGAAGATGAAGAATCTGTGGATATTTTTCCTGAAGAGGCAGTAGCTGGGAACCCTTTCCCCAATGTGCAGCCGAATAACTCTCTGCAATATATATCTGCTGAAACTTCTATTCGTTCACCCTCAAACGCCTTTTATACTGATTCCTCGGATCCCTGTACAGGGATCCCCTTGGGTGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCGGTTGTTGCAACCATTATGAGGAGCTCTGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCAAAAATGCTCGACAAGTTGATTAATGAACATTCTGCAGCAACCACCACAAGTGCTTACACAAGTACTGGGGATTCCACTCCTGGTGTTAAGCCTGCCGCCACTCCAGTTATGTTGTCTACGTCTACTGATGTGAAAGCTTCTGGGGCTACACCTACAAGTGGAGTGGGTTCATTGCCTTTTGGTCTGAAAACTGCATATCCATCAGTTTCAGTATTGAGTCCTACACCTGACAAGCCAGCCACTCTGCCAGTGCCTGCAGCTCCATCAGTCTCACCGTTCTCTCCGGCTCATGATAATCCAGTTACTGCACCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAATACCCTCAGTTTCATTGCTCACAACTACACATGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAAGTGGTATTTCCCCTACATTAAATACTCAGCCTCAGCAAGATTCAGCTCTGGCATCTGGGCCAAAGCGAGCCGCTGCAATGGCCGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAATCTGCATGCTGTTGTTAATCCGGTGCAATCCCCTGCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTAATCTCCAAGATTTGAAACCGGTACATAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCCTAGGGGCACAGAGTGCAAAAAGATTGAAATTGGGACCATAG 1560 0.4468 MLNSNSTINDPNDLPPGFESSHFLKQTRVDFSCISQIKWECPLPFVVNPDWRVVAGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDDFTPLIPIIPIEDEESVDIFPEEAVAGNPFPNVQPNNSLQYISAETSIRSPSNAFYTDSSDPCTGIPLGGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHSAATTTSAYTSTGDSTPGVKPAATPVMLSTSTDVKASGATPTSGVGSLPFGLKTAYPSVSVLSPTPDKPATLPVPAAPSVSPFSPAHDNPVTAPVPLSRPLSGKPGIPSVSLLTTTHASHIPRSVSKQIHHVSSGISPTLNTQPQQDSALASGPKRAAAMAGELSTGPVPSLTRNLHAVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNLQDLKPVHNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAGNILGAQSAKRLKLGP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03587 519 ProSiteProfiles Zinc finger C3H1-type profile. 471 498 IPR000571 GO:0046872
Viun3g03587 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 5 518 - -
Viun3g03587 519 MobiDBLite consensus disorder prediction 340 371 - -
Viun3g03587 519 MobiDBLite consensus disorder prediction 340 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03587 Viun-Chr3 42662968 42670330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03587 36 107 Homeobox Transcription Factor Family AT4G02560 41.667 9.66e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g03587 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03587 - - pvu:PHAVU_003G260700g 696.427