Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03562 ATGGCTTCGTGCACCACGCTCTACCAGATTCTGGGAATCTGTCCAGCCGCGTCGGAAGGAGAAATCAAAGCGGCTTACCGGCAACTGGTGAAGGTCTGCCACCCGGACGTGGCTCCGATGGGGAAAAAGGAATCCTCTGGGAGCGAGTTCATAAAGATCCACGATGCTTATCGCACGCTATTGAATCCCGATAAGCGTGCCAAGTATGATCGAAACTTGATTCCACGTGGGCGAGTGTTCTCAACGGCGTCGTCTGGAGTTTCCGGCTATAATGGTCGGAGATGGGAAACTGACCAGTGCTGGTAG 306 0.5392 MASCTTLYQILGICPAASEGEIKAAYRQLVKVCHPDVAPMGKKESSGSEFIKIHDAYRTLLNPDKRAKYDRNLIPRGRVFSTASSGVSGYNGRRWETDQCW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03562 101 SMART dnaj_3 5 65 IPR001623 -
Viun3g03562 101 Pfam DnaJ domain 7 70 IPR001623 -
Viun3g03562 101 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Viun3g03562 101 CDD DnaJ 6 62 IPR001623 -
Viun3g03562 101 SUPERFAMILY Chaperone J-domain 2 80 IPR036869 -
Viun3g03562 101 Gene3D DnaJ domain 1 88 IPR036869 -
Viun3g03562 101 PRINTS DnaJ domain signature 8 26 IPR001623 -
Viun3g03562 101 PRINTS DnaJ domain signature 26 41 IPR001623 -
Viun3g03562 101 PRINTS DnaJ domain signature 45 65 IPR001623 -
Viun3g03562 101 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 4 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03562 Viun-Chr3 42437700 42438712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03562 8 70 C2H2 Transcription Factor Family AT1G74250 35.821 2.12e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03562 - - gmx:100779511 130.183