Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03557 ATGGCGGAAGAAAGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGAAAGGGCTTCGGCTTCATTAAGCCTGACGACGGCGGCGAGGATCTCTTCGTTCATCAGTCATCCATCAGATCCGACGGTTACCGCACTCTCCTCGAGGGCGATCGCGTCGAGTTCGCTATCGCCACCGGCGACAACGACAAGACCAAGGCCGTCGATGTCACCGGAATCGACGGCGCACCGCTCCAGCCCCGCGCCGCCGCCGGCAATCGTGGTTCTGGGTACGGCTTCGGCTCCAGGCGGAATGGCGCGGGCTCTGGCGGAGCCACGTGCTACCAGTGTGGCGATTTCGGCCATCTGGCTAGGGACTGCAACCGAAGCAGCAATTCAGGCGGCGGAGGCGGGGGAGGGTGCTTTGTTTGCGGCGGGTTCGGTCACCTCGCGAGGGATTGCGTGCGCGGAGGAAACGGCGGCGGAGGAGGCGGCGGCGGAAGCGGCTCTTGCTTTAGGTGTGGTGGATTTGGACACATGGCGAGGGATTGCGCAACCGCGAAGAGCGTCGGTGGTGGTGGTGGTGGTAGTGGTGGCGGTTGTTTTCGGTGTGGGGAGGTAGGTCATTTGGCTAGGGATTGCGGCATTGAAGGAGGAAGGTACGGCGGTGGTAATAGTGGTGGTGGTGGTGGCGGCGGCGGCGGTGCTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTCGAGGCTTCCGGGTGA 756 0.6257 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAAAGNRGSGYGFGSRRNGAGSGGATCYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGSGSCFRCGGFGHMARDCATAKSVGGGGGGSGGGCFRCGEVGHLARDCGIEGGRYGGGNSGGGGGGGGGAGKSTCFNCGKPGHFARECVEASG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03557 251 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Viun3g03557 251 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Viun3g03557 251 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 182 248 - -
Viun3g03557 251 SUPERFAMILY Retrovirus zinc finger-like domains 153 207 IPR036875 GO:0003676|GO:0008270
Viun3g03557 251 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Viun3g03557 251 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Viun3g03557 251 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Viun3g03557 251 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Viun3g03557 251 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Viun3g03557 251 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Viun3g03557 251 Gene3D - 100 155 - -
Viun3g03557 251 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Viun3g03557 251 Gene3D - 188 214 - -
Viun3g03557 251 Gene3D - 226 251 - -
Viun3g03557 251 Gene3D - 158 185 - -
Viun3g03557 251 SUPERFAMILY Retrovirus zinc finger-like domains 213 247 IPR036875 GO:0003676|GO:0008270
Viun3g03557 251 Gene3D - 1 82 IPR012340 -
Viun3g03557 251 SMART csp_8 7 72 IPR011129 GO:0003676
Viun3g03557 251 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 Pfam Zinc knuckle 192 206 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 Pfam Zinc knuckle 232 246 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Viun3g03557 251 ProSiteProfiles Zinc finger CCHC-type profile. 233 246 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03557 Viun-Chr3 42400285 42403254 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Viun3g03557 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03557 K09250 - gmx:100806783 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03557 3 42400285 42403254 Viun3g03557 3 42400285 42403254 ECH