Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03546 ATGGCTGCCAAGTGCAGACACGTTTTTGATAGATTACAGAGTTTGAGTTTTTGCACTTACTGGAAAAAAAACACCACGCCAACAGGCAGACGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTACGCCAGCACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTTTAGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTTCTCACTTTCCTCACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAACAGTTTGGCTTACGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTCTGAATTCTACTTCTGAAATTACTACTGCTCAGGTTAGGCTGTCGCAGTATGTGATCAGAAGCCACACCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGAGCTGTGACTTGGGCACTGTTTGCCAGTAAAAAAGCTCTGAATTCGATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCACAGAGACCTGAAGGAAAACAACACCTTTTACATATATTCTGATCTTACAAATTACTCCATGGCTGGCCACAATGAGATCAATTCGCTTTCATCGAACGAAGCTTGGAATGACAAAGACATTCACGGAAACAAGTCTGCAATTTGGTATCGGGAACCGCTTGATCCTGTCAGCGGAGAGAAGATTGGAAAAGTGATGCCAATTGCACCAGAAGACTCGATCAATATAGCAGGAATCTCCCAAGTACCCGATGGTGTAGCTTCATGGCATGTTGCTGTTAGCAAGTTTACAGATTCACCATTGCTTTCTGCGGCATTGCCAGTTTGGGACTCTTCAAATAAAAGCATTGTTGCAGTTGTGGGTGTCACAACTGCACTTTATAGCGTGGGGCAGCTCATGAAAGAGCTGGTTGAGTTGCACAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATTCTACAAAGCCTCCCAAGCTTATGATGGCTGTTGACTGTGAAAATGAAGTCATAAGAGAGGGAGCTCGGTGGCTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTGGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTTAACCTCAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGCCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTAATCGGGTTACTCGACATTCTTATATCCGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGTTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGACCTAAGCAAGGTGGAATCTGGAAAATTGGTCCTAGAAGATGCAGAATTTGATTTGGGGCGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGCTAGTTGGAGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCGAATTTGATCAACAACTCGATTAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATGCTTGCAGTGATGATACAAATTTTCCACTAGAGCAGAAGAAATCACGGTGTTCACGGAAGAACAGAGCAAAACAACATGAAAACCATGCACAGAGGACTTCCAACAGAGATAACAAAATAGTACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACGGGTCTTGGTCTTTGCATTGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTGAAAAAGGATGGCCCAGGAACACTGATGCGATTATACTTGCGTCTGAGTGCACCCCTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTTCTTGCACTACATGGCAGTATGGGTAGATCTGTTACATCTAAGTGGTTACAGAAAAATGGGGTAGTGTCTATGGAGGCATCAGAATGGAATGGATTAACACAAATTCTTAGGGTACTCTTTCATGCTAGAAGTTCAGCTCATAATAATGGTTTCGATGCAAATTATTCGGTGCATGAAAATTTAAAGTCGAAACTGCTGAGCATACAGGAAATGAGGAACCCAGTTTTTGTGATTGCTGTTGACATTGAACTACTTGACTTGAGCACAGATATATGGAAGGAACAACTCAATTTCCTTCACAGATACTTTGGGAGAGCGAAATTCGTGTGGATACTAAATCATGACTCCTCCAATACCATAAAGATGGAGCTTTGCAGGAAAGGACATACACTGACAGTGAACAAACCCCTCTACAAAACAAAAATGCTTCATATTTTGGAAACCATTACAAAGGAAAGAAGTGATGAGCTACAAAAGAAAAACATGACTACTCCAAGAGCTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTTGAGATTGATTACACTCAATGTGATGTTGCAAGCTCAGATGGTTCTGACATTTCTGAAACGGGAGGTTCTAATCCTGTTCGTGAAAGTGGGGATAAACAAAGAGAGAAGGAAGTGAGATCTGAATCATCATCACAACACAAGATAAATAACTTAGCTGGATTAGCAAATGGATATAAGGAAGATAATAATCCTTGGAAGGAAGAGTTGTGTGAGAGCAGCCTCAACTCTAACAATGTCACACCAAAATCATCCTCCACTAAACAACCACTAGGCACTGAAGGTGAAGATTCTGAATATGGAGAAACAAGAAGTGGCAGTAGCTCGAGCAGAACGGTGAGTGGAAAAAAATCTCTTGAAGGGCTGAGGATATTGCTTGCAGAAGATACACCAGTGATTCAAAGGGTTGCAACCATAATGCTTGAGAAAATGGGAGCCATTGTTGTAGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTGAATGGCATGCCTGGTGTTGAAGATTGTAGAAGGGAGTCTATCATGAAAGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTAGCCCACCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGGTATGAGGCAACAAAAGCAATCAGGAAATCAGAAGTGGGAACTGGTTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCTTGGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGAACATTCTGA 3651 0.4174 MAAKCRHVFDRLQSLSFCTYWKKNTTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITTAQVRLSQYVIRSHTTQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDLTNYSMAGHNEINSLSSNEAWNDKDIHGNKSAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGISQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLMMAVDCENEVIREGARWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVGGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNACSDDTNFPLEQKKSRCSRKNRAKQHENHAQRTSNRDNKIVLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKDGPGTLMRLYLRLSAPLDATEQHCQVDFANKGLVVLLALHGSMGRSVTSKWLQKNGVVSMEASEWNGLTQILRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQEMRNPVFVIAVDIELLDLSTDIWKEQLNFLHRYFGRAKFVWILNHDSSNTIKMELCRKGHTLTVNKPLYKTKMLHILETITKERSDELQKKNMTTPRATVKEGYLHESLEIDYTQCDVASSDGSDISETGGSNPVRESGDKQREKEVRSESSSQHKINNLAGLANGYKEDNNPWKEELCESSLNSNNVTPKSSSTKQPLGTEGEDSEYGETRSGSSSSRTVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGMPGVEDCRRESIMKERNTRSSQTEILSSPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTF 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03546 1216 CDD HisKA 481 542 IPR003661 GO:0000155|GO:0007165
Viun3g03546 1216 Gene3D - 468 547 - -
Viun3g03546 1216 MobiDBLite consensus disorder prediction 972 987 - -
Viun3g03546 1216 SMART REC_2 1065 1208 IPR001789 GO:0000160
Viun3g03546 1216 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 593 743 IPR003594 -
Viun3g03546 1216 Gene3D - 548 746 IPR036890 -
Viun3g03546 1216 SMART HKATPase_4 593 745 IPR003594 -
Viun3g03546 1216 PRINTS Bacterial sensor protein C-terminal signature 670 684 IPR004358 GO:0016310|GO:0016772
Viun3g03546 1216 PRINTS Bacterial sensor protein C-terminal signature 688 698 IPR004358 GO:0016310|GO:0016772
Viun3g03546 1216 PRINTS Bacterial sensor protein C-terminal signature 705 723 IPR004358 GO:0016310|GO:0016772
Viun3g03546 1216 SMART HisKA_10 480 546 IPR003661 GO:0000155|GO:0007165
Viun3g03546 1216 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 467 547 IPR036097 GO:0000155|GO:0007165
Viun3g03546 1216 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 535 742 IPR036890 -
Viun3g03546 1216 MobiDBLite consensus disorder prediction 1012 1036 - -
Viun3g03546 1216 PANTHER TWO-COMPONENT HISTIDINE KINASE 42 749 - -
Viun3g03546 1216 CDD REC_hyHK_CKI1_RcsC-like 1067 1208 - -
Viun3g03546 1216 MobiDBLite consensus disorder prediction 954 971 - -
Viun3g03546 1216 MobiDBLite consensus disorder prediction 642 661 - -
Viun3g03546 1216 Pfam His Kinase A (phospho-acceptor) domain 481 546 IPR003661 GO:0000155|GO:0007165
Viun3g03546 1216 Pfam Response regulator receiver domain 1129 1205 IPR001789 GO:0000160
Viun3g03546 1216 SUPERFAMILY CheY-like 1063 1213 IPR011006 -
Viun3g03546 1216 Gene3D - 1045 1210 - -
Viun3g03546 1216 ProSiteProfiles Response regulatory domain profile. 1066 1212 IPR001789 GO:0000160
Viun3g03546 1216 MobiDBLite consensus disorder prediction 954 1058 - -
Viun3g03546 1216 ProSiteProfiles Histidine kinase domain profile. 487 745 IPR005467 -
Viun3g03546 1216 FunFam Histidine kinase 1-like protein 468 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03546 Viun-Chr3 42281754 42287631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03546 4 1213 Histidine Kinase Gene Family AT2G17820 64.245 0.0 1556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g03546 HATPase_c 7.1e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03546 - - gmx:100801970 2158.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03546 3 42281754 42287631 Viun3g03546 3 42281754 42287631 ECH