Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03522 ATGTCGCTGGAGTTTATCGCAGGCATTTTCTCAGCAATGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAAAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGACGGGAACATAAAAGCCTTGAACATGATGCAATATCATTGAGGTGTTTTGATTTTAAGGAACTAGAGAAAGCAACAGCAAATTTTAGCCAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGAGTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTTTGAATCATTCACGAGTGTGGATGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCAGTTAGGCACAGGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTGGTCTATGAATATGTTCCAAACGGTTCACTGCTTGAGTACATCATGGGAAGCAGAATGAGCTTAACTTGGAGGCGAAGAGTGAAAATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGGTGTGAAACCAAGCATAATCCACCGTGACATAAAACCAAGTAACATCCTATTAGGGGAAGGTTTTGAGGCTAAGGTTTCGGATTTTGGGTTAGTAAAATCAGGTCCAACTGGTGATCAGTCACATGTGAGCAGCCAGATTAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGATGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGAAAAACAAAGCAATCAACATATCATTGACTGGGCAAGGCCAAGCATAGAAAAGGGAAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAGAGTGAACCCTGCAATATGGAAGTTATGCTGAAGATGGGGCAACTTGGTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTGTGTCAAGAACTTGAGCGAGCCCTCAGCTCAGCTGATAGCTTCAACAGCAACAAACAGTTTTCAAAGGGATTCTTTACACCAATTGGCTTATCCCAGCAATCTCCCAAGTCTGAGACTCGGGGATCAGTTGAATCAAATGATTATTCACAGAGCTTTGTTAGTATTGATGGTGTTGGATTTCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACTAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGAATAGAATGTAA 1290 0.407 MSLEFIAGIFSAMVVALLYWLFRKKVIPFLKQRKTLKGREHKSLEHDAISLRCFDFKELEKATANFSQDCLLGSGAFGNVYKGTFELEGTLAIKRAHFESFTSVDEFRNEVRLLSAVRHRNLIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMGSRMSLTWRRRVKIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTEKQSNQHIIDWARPSIEKGSVEEIIDANLLCQSEPCNMEVMLKMGQLGLRCVVEEPKHRPTMTQVCQELERALSSADSFNSNKQFSKGFFTPIGLSQQSPKSETRGSVESNDYSQSFVSIDGVGFQKFHVDMDSFSFKSTNLRCLENNSISIDMNRM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03522 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Viun3g03522 429 SMART serkin_6 66 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03522 429 Gene3D Phosphorylase Kinase; domain 1 29 144 - -
Viun3g03522 429 SUPERFAMILY Protein kinase-like (PK-like) 47 341 IPR011009 -
Viun3g03522 429 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Viun3g03522 429 CDD STKc_IRAK 72 343 - -
Viun3g03522 429 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 145 348 - -
Viun3g03522 429 PANTHER OS01G0750732 PROTEIN 39 365 - -
Viun3g03522 429 ProSiteProfiles Protein kinase domain profile. 66 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03522 429 Gene3D Transferase(Phosphotransferase) domain 1 145 362 - -
Viun3g03522 429 Pfam Protein kinase domain 69 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03522 429 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03522 Viun-Chr3 42092588 42095125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03522 52 388 Receptor kinase-like Gene Family AT1G30570 40.533 1.99e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun3g03522 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03522 - - var:108328541 820.461