Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03520 ATGAATGAGTTTGGAGAGAATTGGTGCGAAGAAGTCTCTAAATATCTTGAGTTCAAAGCTACCACGCTTGATCATTGGTCGATAGATGTCAAGTGCGAAGAAGAACCTTGCAACTTACAAGGTCCTTCATTGCCCCAACAAAACTTGATTGATTATCCTCCAACACAAGAACACAATGCAAACGTGAATAACGTAGAGTTGGGTTTGATCCCGCTATCCAACAATCTGCCAAACTTGCAAAGCCAAAATGGTGATCCTTCGACAAAACATCGACAACGCAAGCCAAGGATCACATGGAGCGATGAAGAACACATGTTATTTCTTCTTGGCATTCAAATGTGTGGCATGAGTTGGAAAAGGATTTCACAAGATTTTGTTCGAACCAAAACACCATCTCAATTGGCCAGTCATGCCCAAAAATTTTTCGAACGTCAGAAAATGCTGCCATCACAGAGGAGAAGAAAAAGCATTCACGATATAACTCTTCCTCCTCATTTTTATCCACATCTTGTTCAAAATTTATCCATGCAAGATCTTCAAGTTTCTACTCCTATTCAAGATTTCTCCATGCAAGATCTTCAAGTTCCTACTCCTATTCAAGATTTCTCCATGCAAGATCTTCAAGATCCTACTCTTGTTCAAGATTTCTCCATGCAATACACTCATGTTCAAAATTTCTCCATGCAAAACACTCAAGTTTCTAATTTTAATCAACCTACCAACACTCCTGGTCCAAGATGGTCAAATTCCTATTATTGA 759 0.39 MNEFGENWCEEVSKYLEFKATTLDHWSIDVKCEEEPCNLQGPSLPQQNLIDYPPTQEHNANVNNVELGLIPLSNNLPNLQSQNGDPSTKHRQRKPRITWSDEEHMLFLLGIQMCGMSWKRISQDFVRTKTPSQLASHAQKFFERQKMLPSQRRRKSIHDITLPPHFYPHLVQNLSMQDLQVSTPIQDFSMQDLQVPTPIQDFSMQDLQDPTLVQDFSMQYTHVQNFSMQNTQVSNFNQPTNTPGPRWSNSYY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03520 252 Pfam Myb-like DNA-binding domain 98 140 IPR001005 -
Viun3g03520 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 146 IPR017930 -
Viun3g03520 252 MobiDBLite consensus disorder prediction 75 95 - -
Viun3g03520 252 ProSiteProfiles SANT domain profile. 99 146 IPR017884 -
Viun3g03520 252 CDD SANT 98 142 IPR001005 -
Viun3g03520 252 PANTHER TRANSCRIPTION FACTOR KUA1 58 229 - -
Viun3g03520 252 SMART sant 95 144 IPR001005 -
Viun3g03520 252 Gene3D - 97 148 - -
Viun3g03520 252 MobiDBLite consensus disorder prediction 233 252 - -
Viun3g03520 252 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Viun3g03520 252 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03520 Viun-Chr3 42075594 42076445 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun3g03520 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03520 - - vun:114175456 518.464