Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03485 ATGGAACCTCCATACTCTTGTCTTGCCACTGGATTAAAGCATGATGTTTTCATCAGCTTTAGAGGGCCCGATGTACGGAATGGTCTGCTTAGCCATTTGAATAAGGAATTATGTCGCAGAAAGATTGATGTTTACGTGGACAAGAGAATTGAAAGGGGAGATGAAATATCATCCGCACTTCTGAGAGCAATTGAAGGGTCACAGATTTTATTGGTCATATTCTCAGAAGACTATGCTTCATCACCCTGGTGCTTGGAAGAGCTTGCCAAAATGGTTGAATGCAATGAAAAAAACAAACAGATTCTTCTACCTGTTTTCTACAATGTAGATCCATCAGATGTGCGGTCGAAGCGAGGGAATTATGCAGTTGCTTTGGCTAAACATGAAGAAAGGTTCAAGGAAAACATGCTCATGTTCAAGGAAAACATGCTCATGGTACAAAGTTGGAGATCAGCTTTGGAAAAGGCTAGTCATGTAGCAGGGTTTCATTATCCAAAAAATTTTGATGATGAATCTGATCTTGTCGATGAAATCGTAGAACGCATTTCTGGAACGTTGACCAACTTTAGCCCAAGTGGGTCTAACGGCCTCGTTGGAATTGATCAAAACATTGCACAGATTCAATCGTTATTGCTAAAGGAATCAAGTGAAGTTCGTTTTGTTGGAATTTGGGGCATGGGTGGCATAGGTAAGACAACCATTGCTCGTACTATATTTGATAAATATTCTCCTGAATATGAAGGTTGTTGCTTCTTGAATGTGAAAGAAGAAGTGGAACGACACGGACTGAGTAATTTACAGGAGAAACTTATATCTGAACTAATGGAGGGAGAAGGTCTTTATACAAGTGGCACAAACAAAGCAACAATCTTAAATTCTGTTGAGAGAAGGATGATTCGGAAAAAAGTTCTGATTGTGCTTGATGATGTGAATACTCCAAAACAATTGAAATATCTTATTGGCAAGCCAATTTGCTTTGGCCCAGGGAGTAGAGTGCTCGTTACAAGTAGAGATATGCGTGTGCTTACCACTGGAGGAGTTAATCGGATTCACGAGGTCAAGGAAATGGATCCTCAAGATTCCCTCAAGCTTTTCTGCTTAAATGCCTTCAATGAAAACCAACCCAGAAAGGGTTATAAAGAGCTATCTGAAGAGGTGGTTAAAATTGCCCAGGGCAATCCATTAGCCTTGAAAGTTTTAGGTTCAGATTTTCATTCCAGGGGTATAGACACATGGGAGTGTGCATTAAGTAAAATCAAGAAGTATCCCAATGAGGAAATTCAAAGTGTGTTAAGATTCAGTTACGATGGTTTGGATGAAGTAGAGAAAAAGGCATTTCTAGACATTGCATTCTTTTTCAAAGACGATGACAAAGATTACGTGATCAAGCAACTGGATGCTTGGGGATTTCATGGAGCTAGTGGAATAGAGGCTCTTCAGCAAAAAGCTCTGATAACAATATCAGATAACAGGATACAGATTCATGACTTGATCCGAGAAATGGGTTGTGAAATAGTTCGTCAAGAATCTACTAAATATCCCAGAAAACGCAGCCGGTTGAGGGATCCTATGGAAGTATCTGATGTACTGAAACAGAACCTGAGAACTGACAAGGTGGAGGGGATGCAGATAGATGTGTCTGGAATTAAAGATTTTCCTTTGAGATTAGGCACTTTTAAAAAGATGCCTTGTTTAAGATTTCTCAAATTTTATCTCCCATTGCATGCTGAGCTCTCTCTGCTGCAAAGCCATGATGGTCCCATTTGGTGTCCGGAGAAACAAGATGAGTTGCTTTTATCTGCAGGGTGCAAGGAACTGATGAGGGTTGCGAGCGAGATTCACATAAAATGTCTTCACTACCTTGTTATTGAGGATTGCTCAGATCCTTCACGACTGAACGAACTAACATCAACTGAAATGAAGATGCTGCAAAACACAGCACAGGACGCTGGAGTGGAAATAATATTGAACTCATCCATTGGACACCTTAGCAGTTTGGAATGCTCCGATGTGGTTGATCAACAGTTCAGGAATTTGCCCAATGAGCTACTTTATGTAAGATACACCTATTACCTTAAGATTTCTAAGGGTAAGCGACCAGACAGTGGAAAACCCAAGTTAAATATTCTATTTGATAGCTTAAGGTATTACCAACGCGTGTCTATGGACGAGTTGTATAACACGGTTGTCGTGTTTCCTCGGAGCAGTCGTGGAGAGATGTGGGTGAAAGGAGCTAAAAAGGAGGTCAAAGGTTTTGTGGTTGCCACGTTCTACTTTCATCTTTACACCGTCCTTTTCTTCCTATCTCCTTCTTCCTTTTCCATCACCTTGCTTATTCAGACTGTAATTTGCTCATTCATTCTTTTCTTCTGTATTTTACTATCATTTTTCTCCCGATCCCGATATCTCGGACAATCATTTGACAACTGTTGA 2433 0.4036 MEPPYSCLATGLKHDVFISFRGPDVRNGLLSHLNKELCRRKIDVYVDKRIERGDEISSALLRAIEGSQILLVIFSEDYASSPWCLEELAKMVECNEKNKQILLPVFYNVDPSDVRSKRGNYAVALAKHEERFKENMLMFKENMLMVQSWRSALEKASHVAGFHYPKNFDDESDLVDEIVERISGTLTNFSPSGSNGLVGIDQNIAQIQSLLLKESSEVRFVGIWGMGGIGKTTIARTIFDKYSPEYEGCCFLNVKEEVERHGLSNLQEKLISELMEGEGLYTSGTNKATILNSVERRMIRKKVLIVLDDVNTPKQLKYLIGKPICFGPGSRVLVTSRDMRVLTTGGVNRIHEVKEMDPQDSLKLFCLNAFNENQPRKGYKELSEEVVKIAQGNPLALKVLGSDFHSRGIDTWECALSKIKKYPNEEIQSVLRFSYDGLDEVEKKAFLDIAFFFKDDDKDYVIKQLDAWGFHGASGIEALQQKALITISDNRIQIHDLIREMGCEIVRQESTKYPRKRSRLRDPMEVSDVLKQNLRTDKVEGMQIDVSGIKDFPLRLGTFKKMPCLRFLKFYLPLHAELSLLQSHDGPIWCPEKQDELLLSAGCKELMRVASEIHIKCLHYLVIEDCSDPSRLNELTSTEMKMLQNTAQDAGVEIILNSSIGHLSSLECSDVVDQQFRNLPNELLYVRYTYYLKISKGKRPDSGKPKLNILFDSLRYYQRVSMDELYNTVVVFPRSSRGEMWVKGAKKEVKGFVVATFYFHLYTVLFFLSPSSFSITLLIQTVICSFILFFCILLSFFSRSRYLGQSFDNC 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03485 810 Gene3D - 9 187 IPR035897 -
Viun3g03485 810 SUPERFAMILY "Winged helix" DNA-binding domain 426 514 IPR036390 -
Viun3g03485 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 686 IPR044974 GO:0006952
Viun3g03485 810 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 188 - -
Viun3g03485 810 PRINTS Disease resistance protein signature 390 404 - -
Viun3g03485 810 PRINTS Disease resistance protein signature 297 311 - -
Viun3g03485 810 PRINTS Disease resistance protein signature 220 235 - -
Viun3g03485 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
Viun3g03485 810 Gene3D - 188 349 IPR027417 -
Viun3g03485 810 SMART till_3 13 159 IPR000157 GO:0007165
Viun3g03485 810 FunFam Disease resistance protein (TIR-NBS-LRR class) 357 439 - -
Viun3g03485 810 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 161 IPR035897 -
Viun3g03485 810 Pfam NB-ARC domain 202 436 IPR002182 GO:0043531
Viun3g03485 810 Pfam TIR domain 13 195 IPR000157 GO:0007165
Viun3g03485 810 ProSiteProfiles TIR domain profile. 12 186 IPR000157 GO:0007165
Viun3g03485 810 Gene3D - 356 439 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03485 Viun-Chr3 41760063 41762981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03485 4 571 WRKY Transcription Factor Family AT4G12020 33.333 5.60e-71 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03485 - - gmx:100305455 1103.58