Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03484 ATGGGTCTCTGCTTCTCTGTTGCTCCATGGCTTCATTACTCCTCTCTCAACCGCCGTCACTCTCGAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTCCTGCGGAACTATCACAACCACCAGGATAAGAAAGAGTCAGTTTTCCGTGAGAGAAAGCATTGAAAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATTGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTCAGGTCCGACAGATTTCTCGGTGAAGGTGGGTTTGGCAGCGTTTACAAGGGATGGTTGGATGAGAACAACCTCACCCCCGCCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATATTCGACCCGGAAGGTTGTCAAGGGTTTTCACAGTGGCAGTCTGAGGTAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTGAGGTTATTGGGGTACTGTTGGGATGAGGATCAGTTTCTTCTTGTGTATGAATTCATGCCAAAGGGAAGCTTAGAGAATCATCTATTCAGAAGAAATCATAGCATGGAACCACTTTCTTGGAACACCCGGCTTAAAATAGTAATCGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCAACGAAAATTTAGTCATATTCAGAGATTTCAAGACCTCAAATGTACTTCTCGACGGGAATTACAATGCAAAATTATCAGATTTTGGGTTGGCTAAGGTGGGACTATCTGGGGGACAACCACAGGCAACTGCCAGGATCATGGGCACACATGGTTATGCCGCTCCAGAATATGTCGCAACAGGGGAATTGTATGTGAATAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGTAATTGACAAAAGAAGGCCAACAAAGCAGCAGAACCTGGTTGAATGGAGAAAACCATGTCTCTCTTCCAAAAAGAAGTTGAAAAGCATTATGGATGGTAGGATAGAGGGTCAATATTCAACCAAGGCTGCATTAGAAACAGCAAAACTTACTCTGAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAGATATCCATTGA 1137 0.4547 MGLCFSVAPWLHYSSLNRRHSRGSSDIHGSNVESCGTITTTRIRKSQFSVRESIESECSPLPFPGGQILKLPELKVFSFEELKSATGNFRSDRFLGEGGFGSVYKGWLDENNLTPAKPGSGVVVAIKIFDPEGCQGFSQWQSEVNVLGRLSHPNVVRLLGYCWDEDQFLLVYEFMPKGSLENHLFRRNHSMEPLSWNTRLKIVIGAARGLAFLHANENLVIFRDFKTSNVLLDGNYNAKLSDFGLAKVGLSGGQPQATARIMGTHGYAAPEYVATGELYVNSDVYGFGVVLLEILTGMRVIDKRRPTKQQNLVEWRKPCLSSKKKLKSIMDGRIEGQYSTKAALETAKLTLKCLKPDPRQRPSMKQVLERLEAIEDIH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03484 378 Gene3D Transferase(Phosphotransferase) domain 1 175 378 - -
Viun3g03484 378 SUPERFAMILY Protein kinase-like (PK-like) 71 373 IPR011009 -
Viun3g03484 378 PANTHER OS01G0588500 PROTEIN-RELATED 46 374 - -
Viun3g03484 378 ProSiteProfiles Protein kinase domain profile. 89 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03484 378 FunFam Serine/threonine-protein kinase BIK1 63 174 - -
Viun3g03484 378 Pfam Protein kinase domain 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03484 378 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 377 - -
Viun3g03484 378 CDD STKc_IRAK 95 374 - -
Viun3g03484 378 Gene3D Phosphorylase Kinase; domain 1 73 174 - -
Viun3g03484 378 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03484 Viun-Chr3 41738245 41740791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03484 75 371 Glycoside Hydrolase AT3G07070 47.315 5.10e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03484 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03484 - - vum:124825635 557.37