Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03482 ATGGCATCGTCAACTTCTTGTGGTGTTAGTGAAATAAAACATGATGTGTTCATCAGCTTTAGAGGCACAGATGTCCGCAGTGGTCTTCTTAGCCATTTGAAAAGAGAATTACATCGCAAGCATATTGATGCCTATGTGGATGAGAGACTTGATAAAGGAGGTGAAATATTACCCTTGCTTCTCAGAGCAATTGAAGGGTCAAAAATATTTTTGGTCGTATTCTCCAAACACTATGCTTCATCACAGTCGTGCCTAGAAGAGCTTGCCAAAATGGTTGAATGCATGGAAACAAATAACCAGATTCTTCTACCTGTTTTCTTCCATGTAGATCCATCACACGTGCGACACCAACATGGAGATTATGGAGATGATTTAGCTCAACATGAAGAAAAGTTCAAGGAAAACATGCTCAAGGTACAAAGTTGGAGATCAGCTTTGAAAAAAGCTGGTCGTTCATCCGGATTTCATTATCCAACAAATTATAAGAATGAATCTGATCTTGTGGATGAAATTGTGAAAGACATTTCAGTAAAATTGAGCGAGTTTTACCCAAGTGAATCAAATGGTCTTGTTGGAATTGATCAAAACATTACACAGATTCAGTCCTTGCTGCGAGTAGAATCAAATGAAGTTGTTTTTGTTGGAATTTGGGGCATGGGTGGAATAGGTAAGACAACCATTGCCCGTGCCATATTTGATAAATGTTCTCTTCGGTATGATGGTTGTTGTTTCTTCAATGTAAGAGAAGAATCGGAACGGCATGGATTCAGCAATTTACGAGAGAGGCTCATTTATGAACTACTTGAAGGAGAAGATCTCCATAGAAGCGGCACAAGCAAAGCAAGAATCTTCAGTTCTGCTCTAAGAATGCTGGGTCGGAGAAAAGTTATGGTGGTGATTGATGATGTAAATACTTCTGAAGAATTACAGTATCTGGTCACAAAACCTGTTTGCTTTGGTGCGGGGAGTAGAGTGATAGTAACAAGTAGAGATCAGAACGTGCTTACAAGTGGAGAACTTCATCAAATTCATGAGGTCAAGGAAATGGGCCCTCTTGATTCTCTCAAGCTCTTCTGTTTGAATGCCTTCAATGAAAGCCAACCCAAAACGGGATATGAAAAACTAACTGAAGAGGTGCTTAAAATCGCCCAGGGCAATCCCTTAGCCTTAAAAGTTTTAGGTGCAGATTTCCATTCCAGAAGTGGTAAAAACACATGGAAGTGTGCATTAAGCAAATTCAAGAAGTATCCCAATGAGAAAATTCAAAGTGTGTTGAAATTCAGTTATGATGGACTGCATGAAGTAGAGAAAAAGGCCTTCCTAGATATTGCATTCTTTTTCCAAGAAGACACCGAAGAGTATGTTATAAAACAACTAGATGCATGGGGACTTCATGGAGCTAGTGGAGTGGAGGTTCTCCAACGAAAAGCTCTCATAACAGTTTCAAATGACAACATAATACAAATGCATGACCTGATACGACAAATGGGTTGGGAAATAGTTCGTCAAGAATGTATTATACATCCAGGGAGACGCACCCGATTGAGGGATAAAGAGGAAGTATACAATGTATTGAGGTATAAGCTGGGAAGCGATAAGGTGGAGGCCATGCAAGTAGATGTGTTTCGAATTAAAGATTTGCCTCTGAAACTGGGAACTTTTAAGAAGATGCCTCGTCTGAGATTTCTGAAATTTTATCTCCCATTGCATGATAATCTTTTCATGCCGCCAAACCAGGATGGAAATTTATGGTATGGAGAACATCACTTTCCGTTGCTTTTATCTGCATGGTGCAAAGAACTAATGAAAGTTGCATGTGAGATTCAGATAAAGTGTATTGAGTACCTTTATATTGATGGTTGTTCACATCCTTCTCAACTGAACAAATCTTCAGTAACACCGACGCTAGGAAACCATGCAATGGAAACACTGTCGTTGGCATTGATGTCATTGAACGAACCAATTGGTTCTCTCAGGGATCTTGAATGCTCAGATATGCTTGATCAACAATTTAAGACTCTGCCTGATGGGTTACTTTGCCTGAGATCTACTTATTATCTTAAGCTTTCTAAAAAGAGCACGGGGCAAGACAGTGGAAAACCTAAGTTGCACGTTCTGTTTGACAGCTTAAGGTTTTATGAACGAATATCTGTGAGCCAGTTGGATAACTCAGATGTTGGGGGTCATCGGGTGCCATTCTTTTATGTTGCTGCTTTTATCTTTCTATTGCATCTCCTTCTTAAGAGACCCTGGTTTCAGTTCCTCTTTTCTTTTCCTTTCCAATTCTCTTGCATTTTCTTTTTGTATCTTTTTTCTCATCTTACTTCCCTGTTCTATCCACCCCTTGCATTTTCCCTGTCATGGGTAGAGGCTTTCTTTCTACTCCTGTTCTTTAACATTTTGGGTAAAATATGTTATTGGTTTCTCAGGGTTTTTAAGAAATATTAG 2448 0.3934 MASSTSCGVSEIKHDVFISFRGTDVRSGLLSHLKRELHRKHIDAYVDERLDKGGEILPLLLRAIEGSKIFLVVFSKHYASSQSCLEELAKMVECMETNNQILLPVFFHVDPSHVRHQHGDYGDDLAQHEEKFKENMLKVQSWRSALKKAGRSSGFHYPTNYKNESDLVDEIVKDISVKLSEFYPSESNGLVGIDQNITQIQSLLRVESNEVVFVGIWGMGGIGKTTIARAIFDKCSLRYDGCCFFNVREESERHGFSNLRERLIYELLEGEDLHRSGTSKARIFSSALRMLGRRKVMVVIDDVNTSEELQYLVTKPVCFGAGSRVIVTSRDQNVLTSGELHQIHEVKEMGPLDSLKLFCLNAFNESQPKTGYEKLTEEVLKIAQGNPLALKVLGADFHSRSGKNTWKCALSKFKKYPNEKIQSVLKFSYDGLHEVEKKAFLDIAFFFQEDTEEYVIKQLDAWGLHGASGVEVLQRKALITVSNDNIIQMHDLIRQMGWEIVRQECIIHPGRRTRLRDKEEVYNVLRYKLGSDKVEAMQVDVFRIKDLPLKLGTFKKMPRLRFLKFYLPLHDNLFMPPNQDGNLWYGEHHFPLLLSAWCKELMKVACEIQIKCIEYLYIDGCSHPSQLNKSSVTPTLGNHAMETLSLALMSLNEPIGSLRDLECSDMLDQQFKTLPDGLLCLRSTYYLKLSKKSTGQDSGKPKLHVLFDSLRFYERISVSQLDNSDVGGHRVPFFYVAAFIFLLHLLLKRPWFQFLFSFPFQFSCIFFLYLFSHLTSLFYPPLAFSLSWVEAFFLLLFFNILGKICYWFLRVFKKY 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03482 815 Gene3D - 8 179 IPR035897 -
Viun3g03482 815 Pfam NB-ARC domain 198 430 IPR002182 GO:0043531
Viun3g03482 815 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 690 IPR044974 GO:0006952
Viun3g03482 815 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 181 - -
Viun3g03482 815 Gene3D - 351 433 IPR042197 -
Viun3g03482 815 Gene3D - 180 344 IPR027417 -
Viun3g03482 815 SUPERFAMILY "Winged helix" DNA-binding domain 420 505 IPR036390 -
Viun3g03482 815 PRINTS Disease resistance protein signature 213 228 - -
Viun3g03482 815 PRINTS Disease resistance protein signature 290 304 - -
Viun3g03482 815 PRINTS Disease resistance protein signature 383 397 - -
Viun3g03482 815 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Viun3g03482 815 Pfam TIR domain 13 191 IPR000157 GO:0007165
Viun3g03482 815 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun3g03482 815 SMART till_3 13 152 IPR000157 GO:0007165
Viun3g03482 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03482 Viun-Chr3 41728591 41731561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03482 10 566 WRKY Transcription Factor Family AT4G12020 30.319 4.20e-59 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03482 - - gsj:114380997 1025