Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03481 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCGAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAATTGCGATGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGATGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACGTACTAATCCAACTGGTGGAACCAGTACTACCAGCACCGATACCAATACTGCAACAAATAATGCCACAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGGCTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGGTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAATTAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGCAAATAGTAATGCAGCAATTTCAGGGACTCATGGTGACCATGCAAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACCGCTGGTTCTGCCTTACCTAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTAGCCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTACTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGACGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCCTCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAGCAACCAACACGCAGGGAATCTGGTGAAACCGGCGGAGGCACTGTGAACAACTTGGGATTGGAGATGTTGTCGAGTATGTTTGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCGAATGAGCCACCAGAGCAATTATATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTAGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1623 0.4603 MGGDSAVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVRTNPTGGTSTTSTDTNTATNNATGAGANEGGSLGGLGFGASLFPGLGINGTGGNGLFGDGFPDLEQMQQPFLSNPNLVRELMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTANSNAAISGTHGDHARDQSTNPSTTSSEATAGSALPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLSLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQPTRRESGETGGGTVNNLGLEMLSSMFGGLGTGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03481 540 CDD UBA_PLICs 498 536 - -
Viun3g03481 540 MobiDBLite consensus disorder prediction 90 114 - -
Viun3g03481 540 SMART uba_6 498 536 IPR015940 -
Viun3g03481 540 Gene3D - 480 540 - -
Viun3g03481 540 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Viun3g03481 540 CDD Ubl_Dsk2p_like 15 87 - -
Viun3g03481 540 PANTHER UBIQUILIN 15 535 IPR015496 -
Viun3g03481 540 Gene3D - 187 245 - -
Viun3g03481 540 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Viun3g03481 540 Gene3D - 12 97 - -
Viun3g03481 540 MobiDBLite consensus disorder prediction 275 342 - -
Viun3g03481 540 SUPERFAMILY Ubiquitin-like 14 101 IPR029071 -
Viun3g03481 540 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Viun3g03481 540 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Viun3g03481 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Viun3g03481 540 MobiDBLite consensus disorder prediction 89 114 - -
Viun3g03481 540 SMART CBM 192 231 IPR006636 -
Viun3g03481 540 SMART CBM 138 179 IPR006636 -
Viun3g03481 540 SMART CBM 356 397 IPR006636 -
Viun3g03481 540 SMART CBM 400 435 IPR006636 -
Viun3g03481 540 SMART ubq_7 15 86 IPR000626 GO:0005515
Viun3g03481 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Viun3g03481 540 MobiDBLite consensus disorder prediction 275 355 - -
Viun3g03481 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Viun3g03481 540 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03481 Viun-Chr3 41715254 41722761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03481 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 9.10e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03481 K04523 - gmx:100776447 876.7