Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03480 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCGAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAATTGCGATGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGATGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACGTACTAATCCAACTGGTGGAACCAGTACTACCAGCACCGATACCAATACTGCAACAAATAATGCCACAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGGCTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGGTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAATTAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGCAAATAGTAATGCAGCAATTTCAGGGACTCATGGTGACCATGCAAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACCGCTGGTTCTGCCTTACCTAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTAGCCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTACTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGACGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCCTCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAGCAACCAACACGGGAATCTGGTGAAACCGGCGGAGGCACTGTGAACAACTTGGGATTGGAGATGTTGTCGAGTATGTTTGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCGAATGAGCCACCAGAGCAATTATATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTAGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1620 0.4599 MGGDSAVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVRTNPTGGTSTTSTDTNTATNNATGAGANEGGSLGGLGFGASLFPGLGINGTGGNGLFGDGFPDLEQMQQPFLSNPNLVRELMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTANSNAAISGTHGDHARDQSTNPSTTSSEATAGSALPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLSLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQPTRESGETGGGTVNNLGLEMLSSMFGGLGTGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03480 539 MobiDBLite consensus disorder prediction 90 114 - -
Viun3g03480 539 Gene3D - 479 539 - -
Viun3g03480 539 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 491 536 IPR015940 -
Viun3g03480 539 Pfam UBA/TS-N domain 497 533 IPR015940 -
Viun3g03480 539 CDD UBA_PLICs 497 535 - -
Viun3g03480 539 CDD Ubl_Dsk2p_like 15 87 - -
Viun3g03480 539 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Viun3g03480 539 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Viun3g03480 539 Gene3D - 12 97 - -
Viun3g03480 539 MobiDBLite consensus disorder prediction 275 342 - -
Viun3g03480 539 SUPERFAMILY UBA-like 493 535 IPR009060 GO:0005515
Viun3g03480 539 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Viun3g03480 539 MobiDBLite consensus disorder prediction 89 114 - -
Viun3g03480 539 SMART CBM 192 231 IPR006636 -
Viun3g03480 539 SMART CBM 138 179 IPR006636 -
Viun3g03480 539 SMART CBM 356 397 IPR006636 -
Viun3g03480 539 SMART CBM 400 435 IPR006636 -
Viun3g03480 539 SMART ubq_7 15 86 IPR000626 GO:0005515
Viun3g03480 539 SUPERFAMILY Ubiquitin-like 14 101 IPR029071 -
Viun3g03480 539 MobiDBLite consensus disorder prediction 275 355 - -
Viun3g03480 539 Gene3D - 187 245 - -
Viun3g03480 539 PANTHER UBIQUILIN 15 534 IPR015496 -
Viun3g03480 539 SMART uba_6 497 535 IPR015940 -
Viun3g03480 539 FunFam Ubiquitin domain-containing protein DSK2b 480 538 - -
Viun3g03480 539 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03480 Viun-Chr3 41715254 41722761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03480 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.57e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03480 K04523 - gmx:100776447 882.863