Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03478 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCGAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAATTGCGATGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGATGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACGTACTAATCCAACTGGTGGAACCAGTACTACCAGCACCGATACCAATACTGCAACAAATAATGCCACAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGGCTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGGTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAATTAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGCAAATAGTAATGCAGCAATTTCAGGGACTCATGGTGACCATGCAAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACCGCTGGTTCTGCCTTACCTAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTAGCCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTACTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGACGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCCTCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAGCAACCAACACGGGAATCTGGTGAAACCGGCGGAGGCACTGGACCAGTGAACAACTTGGGATTGGAGATGTTGTCGAGTATGTTTGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCGAATGAGCCACCAGAGCAATTATATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTAGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1626 0.4606 MGGDSAVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVRTNPTGGTSTTSTDTNTATNNATGAGANEGGSLGGLGFGASLFPGLGINGTGGNGLFGDGFPDLEQMQQPFLSNPNLVRELMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTANSNAAISGTHGDHARDQSTNPSTTSSEATAGSALPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLSLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQPTRESGETGGGTGPVNNLGLEMLSSMFGGLGTGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03478 541 MobiDBLite consensus disorder prediction 90 114 - -
Viun3g03478 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Viun3g03478 541 SMART uba_6 499 537 IPR015940 -
Viun3g03478 541 FunFam Ubiquitin domain-containing protein DSK2b 482 540 - -
Viun3g03478 541 CDD Ubl_Dsk2p_like 15 87 - -
Viun3g03478 541 MobiDBLite consensus disorder prediction 446 466 - -
Viun3g03478 541 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Viun3g03478 541 Gene3D - 12 97 - -
Viun3g03478 541 MobiDBLite consensus disorder prediction 275 342 - -
Viun3g03478 541 SUPERFAMILY Ubiquitin-like 14 101 IPR029071 -
Viun3g03478 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Viun3g03478 541 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Viun3g03478 541 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Viun3g03478 541 MobiDBLite consensus disorder prediction 89 114 - -
Viun3g03478 541 SMART CBM 192 231 IPR006636 -
Viun3g03478 541 SMART CBM 138 179 IPR006636 -
Viun3g03478 541 SMART CBM 356 397 IPR006636 -
Viun3g03478 541 SMART CBM 400 435 IPR006636 -
Viun3g03478 541 SMART ubq_7 15 86 IPR000626 GO:0005515
Viun3g03478 541 PANTHER UBIQUILIN 15 536 IPR015496 -
Viun3g03478 541 CDD UBA_PLICs 499 537 - -
Viun3g03478 541 Gene3D - 481 541 - -
Viun3g03478 541 MobiDBLite consensus disorder prediction 275 355 - -
Viun3g03478 541 MobiDBLite consensus disorder prediction 446 462 - -
Viun3g03478 541 Gene3D - 187 245 - -
Viun3g03478 541 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Viun3g03478 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03478 Viun-Chr3 41715073 41722761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03478 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.60e-06 43.9