Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03477 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCGAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCCTTCAAGGATCTCGTTGCTCGCAATTGCGATGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGATGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACGTACTAATCCAACTGGTGGAACCAGTACTACCAGCACCGATACCAATACTGCAACAAATAATGCCACAGGTGCTGGTGCGAATGAAGGTGGGAGTTTAGGAGGGCTTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGGTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAATTAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGCAAATAGTAATGCAGCAATTTCAGGGACTCATGGTGACCATGCAAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACCGCTGGTTCTGCCTTACCTAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTAGCCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTACTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGACGTAATGCAAAATCCGGAATTCCTTCGCTTGTTTTCCTCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAGCAACCAACACGCAGGGAATCTGGTGAAACCGGCGGAGGCACTGGACCAGTGAACAACTTGGGATTGGAGATGTTGTCGAGTATGTTTGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCGAATGAGCCACCAGAGCAATTATATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTAGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1629 0.461 MGGDSAVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVRTNPTGGTSTTSTDTNTATNNATGAGANEGGSLGGLGFGASLFPGLGINGTGGNGLFGDGFPDLEQMQQPFLSNPNLVRELMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTANSNAAISGTHGDHARDQSTNPSTTSSEATAGSALPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLSLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQPTRRESGETGGGTGPVNNLGLEMLSSMFGGLGTGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03477 542 MobiDBLite consensus disorder prediction 90 114 - -
Viun3g03477 542 SMART uba_6 500 538 IPR015940 -
Viun3g03477 542 Gene3D - 12 97 - -
Viun3g03477 542 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Viun3g03477 542 Gene3D - 482 542 - -
Viun3g03477 542 Gene3D - 187 245 - -
Viun3g03477 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Viun3g03477 542 CDD Ubl_Dsk2p_like 15 87 - -
Viun3g03477 542 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Viun3g03477 542 MobiDBLite consensus disorder prediction 275 342 - -
Viun3g03477 542 CDD UBA_PLICs 500 538 - -
Viun3g03477 542 SUPERFAMILY Ubiquitin-like 14 101 IPR029071 -
Viun3g03477 542 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Viun3g03477 542 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Viun3g03477 542 MobiDBLite consensus disorder prediction 89 114 - -
Viun3g03477 542 MobiDBLite consensus disorder prediction 446 463 - -
Viun3g03477 542 SMART CBM 138 179 IPR006636 -
Viun3g03477 542 SMART CBM 192 231 IPR006636 -
Viun3g03477 542 SMART CBM 356 397 IPR006636 -
Viun3g03477 542 SMART CBM 400 435 IPR006636 -
Viun3g03477 542 SMART ubq_7 15 86 IPR000626 GO:0005515
Viun3g03477 542 MobiDBLite consensus disorder prediction 275 355 - -
Viun3g03477 542 PANTHER UBIQUILIN 15 537 IPR015496 -
Viun3g03477 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Viun3g03477 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Viun3g03477 542 MobiDBLite consensus disorder prediction 446 465 - -
Viun3g03477 542 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03477 Viun-Chr3 41714899 41722761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03477 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.88e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03477 K04523 - gmx:100776447 885.945