Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03466 ATGGGTCTCTGCTTCTCCGGTGCTCCGTCTCTTCATTCCTCCTCTCTCAACCGCCATGACTCTCCGGGTTCATCAGACATTCACGGCAGCAACTTCGAGTTCTGCGGAACCACCACAACCACCACGATGAGAAAGACTCAGTTTTCCGTGAGAGAAAGCATCGACAGCGAATGCTCTCCTCTCCCTTTTCCCGAAGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCGACAGGGAATTTCAGGTCCGACAGATTGATCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACAACCTCATCCCCGCTAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATGTTCAACCCGGAAGGTTTACAAGGGTTTTCACAGTGGCAGTCTGAGGTAAATGTTTTAGGAAGGCTTTCTCACCCCAACTTGGTGAGGTTATTGGGTTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTTATGCCAAAGGGAAGCTTAGAGAGTCATCTATTCACAAGAAGTAATAGCATGGAGCCGCTTTCTTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCACGACAACGAAAATTTAGTCATATTCAGAGATTTCAAGACCTCAAATGTACTTCTCGACAGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCCAGAAAAGGACTATCTGGGGGACAATCACAGGCTACCAGGATCATGGGCACATATGGTTATGCCGCTCCAGAATATGTCGCAACAGGCATGAGGGTAATTGACAAAAGAAGGCCAACAGAGCAACAGAACCTGGTTGAATGGAGAAAACCATGTCTCTCTTCCAAAAAGAAGTTGAAAAGCATTATGGATGGTAGGATAAAGGGTCAATATTCAACCAAGGCTGCTTTAGAAACAGCAAAACTTACTCTGAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAGATATTCATTGA 1071 0.4556 MGLCFSGAPSLHSSSLNRHDSPGSSDIHGSNFEFCGTTTTTTMRKTQFSVRESIDSECSPLPFPEGQILKWPELKVFSFEELKSATGNFRSDRLIGEGGFGRVYKGWLDENNLIPAKPGSGVVVAIKMFNPEGLQGFSQWQSEVNVLGRLSHPNLVRLLGYCWDEDQFLLVYEFMPKGSLESHLFTRSNSMEPLSWNTRLKIVIGAARGLAFLHDNENLVIFRDFKTSNVLLDRNYNAKISDFGLARKGLSGGQSQATRIMGTYGYAAPEYVATGMRVIDKRRPTEQQNLVEWRKPCLSSKKKLKSIMDGRIKGQYSTKAALETAKLTLKCLKPDPRQRPSMKQVLERLEAIEDIH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03466 356 SUPERFAMILY Protein kinase-like (PK-like) 64 349 IPR011009 -
Viun3g03466 356 PANTHER OS01G0588500 PROTEIN-RELATED 43 352 - -
Viun3g03466 356 Gene3D Phosphorylase Kinase; domain 1 73 174 - -
Viun3g03466 356 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
Viun3g03466 356 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g03466 356 Pfam Protein kinase domain 90 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03466 356 Gene3D Transferase(Phosphotransferase) domain 1 175 355 - -
Viun3g03466 356 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
Viun3g03466 356 ProSiteProfiles Protein kinase domain profile. 89 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03466 356 MobiDBLite consensus disorder prediction 8 24 - -
Viun3g03466 356 FunFam Os07g0541700 protein 175 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03466 Viun-Chr3 41654918 41657824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03466 75 349 Glycoside Hydrolase AT3G07070 43.624 4.47e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03466 Pkinase 5.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03466 - - vum:124825635 499.59