Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03465 ATGGGTCTCTGCTTCTCCGGTGCTCCGTCTCTTCATTCCTCCTCTCTCAACCGCCATGACTCTCCGGGTTCATCAGACATTCACGGCAGCAACTTCGAGTTCTGCGGAACCACCACAACCACCACGATGAGAAAGACTCAGTTTTCCGTGAGAGAAAGCATCGACAGCGAATGCTCTCCTCTCCCTTTTCCCGAAGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCGACAGGGAATTTCAGGTCCGACAGATTGATCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACAACCTCATCCCCGCTAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATGTTCAACCCGGAAGGTTTACAAGGGTTTTCACAGTGGCAGTCTGAGGTAAATGTTTTAGGAAGGCTTTCTCACCCCAACTTGGTGAGGTTATTGGGTTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTTATGCCAAAGGGAAGCTTAGAGAGTCATCTATTCACAAGAAGTAATAGCATGGAGCCGCTTTCTTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCACGACAACGAAAATTTAGTCATATTCAGAGATTTCAAGACCTCAAATGTACTTCTCGACAGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCCAGAAAAGGACTATCTGGGGGACAATCACAGGCTACCAGGATCATGGGCACATATGGTTATGCCGCTCCAGAATATGTCGCAACAGGGGACTTGTATGTGAATAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGTAATTGACAAAAGAAGGCCAACAGAGCAACAGAACCTGGTTGAATGGAGAAAACCATGTCTCTCTTCCAAAAAGAAGTTGAAAAGCATTATGGATGGTAGGATAAAGGGTCAATATTCAACCAAGGCTGCTTTAGAAACAGCAAAACTTACTCTGAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAGATATTCATTGA 1134 0.4524 MGLCFSGAPSLHSSSLNRHDSPGSSDIHGSNFEFCGTTTTTTMRKTQFSVRESIDSECSPLPFPEGQILKWPELKVFSFEELKSATGNFRSDRLIGEGGFGRVYKGWLDENNLIPAKPGSGVVVAIKMFNPEGLQGFSQWQSEVNVLGRLSHPNLVRLLGYCWDEDQFLLVYEFMPKGSLESHLFTRSNSMEPLSWNTRLKIVIGAARGLAFLHDNENLVIFRDFKTSNVLLDRNYNAKISDFGLARKGLSGGQSQATRIMGTYGYAAPEYVATGDLYVNSDVYGFGVVLLEILTGMRVIDKRRPTEQQNLVEWRKPCLSSKKKLKSIMDGRIKGQYSTKAALETAKLTLKCLKPDPRQRPSMKQVLERLEAIEDIH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03465 377 SUPERFAMILY Protein kinase-like (PK-like) 64 370 IPR011009 -
Viun3g03465 377 PANTHER OS01G0588500 PROTEIN-RELATED 43 373 - -
Viun3g03465 377 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
Viun3g03465 377 CDD STKc_IRAK 95 373 - -
Viun3g03465 377 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 376 - -
Viun3g03465 377 ProSiteProfiles Protein kinase domain profile. 89 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03465 377 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g03465 377 Pfam Protein tyrosine and serine/threonine kinase 92 370 IPR001245 GO:0004672|GO:0006468
Viun3g03465 377 Gene3D Phosphorylase Kinase; domain 1 73 174 - -
Viun3g03465 377 Gene3D Transferase(Phosphotransferase) domain 1 175 377 - -
Viun3g03465 377 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
Viun3g03465 377 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03465 Viun-Chr3 41654918 41657824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03465 75 370 Glycoside Hydrolase AT3G07070 48.322 1.77e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03465 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03465 - - vum:124825635 550.436