Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03464 ATGGGTCTCTGCTTCTCCGGTGCTCCGTCTCTTCATTCCTCCTCTCTCAACCGCCATGACTCTCCGGGTTCATCAGACATTCACGGCAGCAACTTCGAGTTCTGCGGAACCACCACAACCACCACGATGAGAAAGACTCAGTTTTCCGTGAGAGAAAGCATCGACAGCGAATGCTCTCCTCTCCCTTTTCCCGAAGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCGACAGGGAATTTCAGGTCCGACAGATTGATCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACAACCTCATCCCCGCTAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATGTTCAACCCGGAAGGTTTACAAGGGTTTTCACAGTGGCAGTCTGAGGTAAATGTTTTAGGAAGGCTTTCTCACCCCAACTTGGTGAGGTTATTGGGTTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTTATGCCAAAGGGAAGCTTAGAGAGTCATCTATTCACAAGAAGTAATAGCATGGAGCCGCTTTCTTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCACGACAACGAAAATTTAGTCATATTCAGAGATTTCAAGACCTCAAATAATTACAATGCAAAAATATCAGATTTTGGCTTGGCCAGAAAAGGACTATCTGGGGGACAATCACAGGCTACCAGGATCATGGGCACATATGGTTATGCCGCTCCAGAATATGTCGCAACAGGGGACTTGTATGTGAATAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGTAATTGACAAAAGAAGGCCAACAGAGCAACAGAACCTGGTTGAATGGAGAAAACCATGTCTCTCTTCCAAAAAGAAGTTGAAAAGCATTATGGATGGTAGGATAAAGGGTCAATATTCAACCAAGGCTGCTTTAGAAACAGCAAAACTTACTCTGAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAGATATTCATTGA 1119 0.4513 MGLCFSGAPSLHSSSLNRHDSPGSSDIHGSNFEFCGTTTTTTMRKTQFSVRESIDSECSPLPFPEGQILKWPELKVFSFEELKSATGNFRSDRLIGEGGFGRVYKGWLDENNLIPAKPGSGVVVAIKMFNPEGLQGFSQWQSEVNVLGRLSHPNLVRLLGYCWDEDQFLLVYEFMPKGSLESHLFTRSNSMEPLSWNTRLKIVIGAARGLAFLHDNENLVIFRDFKTSNNYNAKISDFGLARKGLSGGQSQATRIMGTYGYAAPEYVATGDLYVNSDVYGFGVVLLEILTGMRVIDKRRPTEQQNLVEWRKPCLSSKKKLKSIMDGRIKGQYSTKAALETAKLTLKCLKPDPRQRPSMKQVLERLEAIEDIH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03464 372 Gene3D Phosphorylase Kinase; domain 1 73 174 - -
Viun3g03464 372 SUPERFAMILY Protein kinase-like (PK-like) 64 365 IPR011009 -
Viun3g03464 372 Gene3D Transferase(Phosphotransferase) domain 1 175 372 - -
Viun3g03464 372 ProSiteProfiles Protein kinase domain profile. 89 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03464 372 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 371 - -
Viun3g03464 372 Pfam Protein tyrosine and serine/threonine kinase 92 365 IPR001245 GO:0004672|GO:0006468
Viun3g03464 372 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g03464 372 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
Viun3g03464 372 PANTHER OS01G0588500 PROTEIN-RELATED 43 368 - -
Viun3g03464 372 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
Viun3g03464 372 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03464 Viun-Chr3 41654916 41657824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03464 75 365 Glycoside Hydrolase AT3G07070 47.315 4.00e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03464 PK_Tyr_Ser-Thr 7.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03464 - - vum:124825635 538.495