Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03463 ATGGGTCTATGCTTCTCCGGTGCTCCATCACTTCACTCCTCTTCGCTCAACAACACTCACTGTTCAGGCAAGTTATCAAATTTTCCGTGTCCTTTCGGTATCAAATTCTCCTTTCCTTTTATATTCCTCCCAAAAGAGGAATTGAGTCGTCCCTTTTTCCTTCGATTCGAATCTTGCCATGAGGGTTGGGTTCCTCTGTTTTCAGGTTCATCAGACATTCACGGCAGCAAAGTGGAGTCCTCCGCAATCACCACAATCAGAGAGACTCAGTCTTCCGTGATTACCAGAGGAAGCATCGACAGCCTATGCTCTCGTTCTCCTCCTCCTCCTCTTTCTCGTTTCATTCCTCCTTCTCTTCTTTCTTTTCCCCGTAGACGGATTCTGAAATCGCCCGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGTCACAAGGAATTTCTGGTCCGACAGATTGCTCGGTGAAGGAAAGTTTGCCCGAGTTTACAAGGGATGGGTGGATGAGAACACCCTCACCCCCGTCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATGTTAAACCCGGAAAGTTCTAAAGGCTTTCAACTGTGGCAGTCTGAGGTAACCATTTTAGGAAGGCTTTCTCACCCCAACTTGGTGAGGTTATTGGGTTATTGTTGGGATGAGAATCAGTTTCTTCTTGTGTATGAGTTCATGTCAAAGGGAAGCTTAGAGTGGCATCTATTCGGAAGAAATCGTAGGAGGGAATCACTTTCTTGGAACACCCGGATTAAAATAGCTATCGGTGCAGCTCGGGGATTAACTTTCTTACAAGGCAACGAAAATAAAGTCATATTCGGAGACTTCAGGACCTCAAGTATACTTCTCGACGGGAATTACAATGCAAAATTATCAGATTTTGGATCGGCTAAATTGTGGCCTCCTGGAGGACAATCACACGTAGATACCAGGGTCTTTGGCACCATTGGCTATGCTGCTCCAGAAATTTTCACAACAGGTCAATTGTATGTGACGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTCACAGGCATGAGGGCACTTGACAAAAGAAGGCCAACAGGGCAGGAGAATCTAGTTGAATGGACCAAGCCTTTTCTCTCTTCCGGAGAAAAGTTGAAAAACATAATGGATGGTGGGATAGAGGGTCAATATTCACAAAAGGAAGCATTTGAAGCAGCACAACTTGCTCTAAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAACCATCCATGAAAATTCCAAAGAATCCAAAACCCGCAATTCTCATCAACATTCCCGGCAGAGAGTTATGAGGGTATAA 1380 0.4478 MGLCFSGAPSLHSSSLNNTHCSGKLSNFPCPFGIKFSFPFIFLPKEELSRPFFLRFESCHEGWVPLFSGSSDIHGSKVESSAITTIRETQSSVITRGSIDSLCSRSPPPPLSRFIPPSLLSFPRRRILKSPELKVFSFEELKSVTRNFWSDRLLGEGKFARVYKGWVDENTLTPVKPGSGVVVAIKMLNPESSKGFQLWQSEVTILGRLSHPNLVRLLGYCWDENQFLLVYEFMSKGSLEWHLFGRNRRRESLSWNTRIKIAIGAARGLTFLQGNENKVIFGDFRTSSILLDGNYNAKLSDFGSAKLWPPGGQSHVDTRVFGTIGYAAPEIFTTGQLYVTSDVYGFGVVLLEILTGMRALDKRRPTGQENLVEWTKPFLSSGEKLKNIMDGGIEGQYSQKEAFEAAQLALKCLKPDPRQRPSMKQVLERLEAIETIHENSKESKTRNSHQHSRQRVMRV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03463 459 ProSiteProfiles Protein kinase domain profile. 148 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03463 459 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 234 446 - -
Viun3g03463 459 FunFam Serine/threonine-protein kinase BIK1 119 233 - -
Viun3g03463 459 MobiDBLite consensus disorder prediction 437 459 - -
Viun3g03463 459 SUPERFAMILY Protein kinase-like (PK-like) 119 430 IPR011009 -
Viun3g03463 459 Gene3D Phosphorylase Kinase; domain 1 132 233 - -
Viun3g03463 459 Gene3D Transferase(Phosphotransferase) domain 1 234 457 - -
Viun3g03463 459 PANTHER OS01G0588500 PROTEIN-RELATED 91 434 - -
Viun3g03463 459 ProSitePatterns Protein kinases ATP-binding region signature. 154 186 IPR017441 GO:0005524
Viun3g03463 459 Pfam Protein tyrosine and serine/threonine kinase 152 430 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03463 Viun-Chr3 41639641 41642635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03463 134 430 Glycoside Hydrolase AT3G07070 45.302 2.88e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03463 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03463 - - vun:114176729 902.123