Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03462 ATGGGTCTATGCTTCTCCGGTGCTCCATCACTTCACTCCTCTTCGCTCAACAACACTCACTGTTCAGGTTCATCAGACATTCACGGCAGCAAAGTGGAGTCCTCCGCAATCACCACAATCAGAGAGACTCAGTCTTCCGTGATTACCAGAGGAAGCATCGACAGCCTATGCTCTCGTTCTCCTCCTCCTCCTCTTTCTCGTTTCATTCCTCCTTCTCTTCTTTCTTTTCCCCGTAGACGGATTCTGAAATCGCCCGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGTCACAAGGAATTTCTGGTCCGACAGATTGCTCGGTGAAGGAAAGTTTGCCCGAGTTTACAAGGGATGGGTGGATGAGAACACCCTCACCCCCGTCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAATGTTAAACCCGGAAAGTTCTAAAGGCTTTCAACTGTGGCAGTCTGAGGTAACCATTTTAGGAAGGCTTTCTCACCCCAACTTGGTGAGGTTATTGGGTTATTGTTGGGATGAGAATCAGTTTCTTCTTGTGTATGAGTTCATGTCAAAGGGAAGCTTAGAGTGGCATCTATTCGGAAGAAATCGTAGGAGGGAATCACTTTCTTGGAACACCCGGATTAAAATAGCTATCGGTGCAGCTCGGGGATTAACTTTCTTACAAGGCAACGAAAATAAAGTCATATTCGGAGACTTCAGGACCTCAAGTATACTTCTCGACGGGAATTACAATGCAAAATTATCAGATTTTGGATCGGCTAAATTGTGGCCTCCTGGAGGACAATCACACGTAGATACCAGGGTCTTTGGCACCATTGGCTATGCTGCTCCAGAAATTTTCACAACAGGTCAATTGTATGTGACGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTCACAGGCATGAGGGCACTTGACAAAAGAAGGCCAACAGGGCAGGAGAATCTAGTTGAATGGACCAAGCCTTTTCTCTCTTCCGGAGAAAAGTTGAAAAACATAATGGATGGTGGGATAGAGGGTCAATATTCACAAAAGGAAGCATTTGAAGCAGCACAACTTGCTCTAAAATGCCTAAAGCCTGACCCTAGACAACGTCCTTCAATGAAACAAGTACTTGAGCGATTGGAAGCCATTGAAACCATCCATGAAAATTCCAAAGAATCCAAAACCCGCAATTCTCATCAACATTCCCGGCAGAGAGTTATGAGGGTATAA 1242 0.4517 MGLCFSGAPSLHSSSLNNTHCSGSSDIHGSKVESSAITTIRETQSSVITRGSIDSLCSRSPPPPLSRFIPPSLLSFPRRRILKSPELKVFSFEELKSVTRNFWSDRLLGEGKFARVYKGWVDENTLTPVKPGSGVVVAIKMLNPESSKGFQLWQSEVTILGRLSHPNLVRLLGYCWDENQFLLVYEFMSKGSLEWHLFGRNRRRESLSWNTRIKIAIGAARGLTFLQGNENKVIFGDFRTSSILLDGNYNAKLSDFGSAKLWPPGGQSHVDTRVFGTIGYAAPEIFTTGQLYVTSDVYGFGVVLLEILTGMRALDKRRPTGQENLVEWTKPFLSSGEKLKNIMDGGIEGQYSQKEAFEAAQLALKCLKPDPRQRPSMKQVLERLEAIETIHENSKESKTRNSHQHSRQRVMRV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03462 413 MobiDBLite consensus disorder prediction 391 413 - -
Viun3g03462 413 Gene3D Transferase(Phosphotransferase) domain 1 188 411 - -
Viun3g03462 413 ProSiteProfiles Protein kinase domain profile. 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03462 413 FunFam Serine/threonine-protein kinase BIK1 73 187 - -
Viun3g03462 413 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Viun3g03462 413 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Viun3g03462 413 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Viun3g03462 413 PANTHER OS01G0588500 PROTEIN-RELATED 42 388 - -
Viun3g03462 413 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 188 400 - -
Viun3g03462 413 Pfam Protein tyrosine and serine/threonine kinase 106 384 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03462 Viun-Chr3 41639638 41642635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03462 88 384 Glycoside Hydrolase AT3G07070 45.302 3.21e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03462 PK_Tyr_Ser-Thr 8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03462 - - vun:114176729 780.015