Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03461 ATGGGTCTCTGCTTCTCCTCCTCTTCCTCCCCTCCGCCCAACCCTCCTAACTACTCAGGTTCAACCAGTAACGTGGGGTTCTCCGCCACCACGAGCAGCTTTGGGAAGAGCCAATTCTCGGAGATTGCGAGTGGGAGCATCGACAGCGAAGGCTCTCTTCCATTTTGTTCCCCCGACGGCCAGATTCTGGAACGGCCCAACTTGAAGGAGTTCAGTTTCGGGGACCTCAAATCCGCGGCCAAGAGTTTCAAGGGGGACACATTGCTGGGTGAAGGTGGGTTTGGCAGAGTCTACAAGGGGTGGTTGGATGAGAAGAACCTCACCCCTGCCAAACCAGGCTCTGGCATGGTCGTCGCCATCAAAAAACTGAACCCCGAAAGCACCCAAGGATTTCAAGAATGGAAGTCAGAAGTGAACTTTTTGGGTAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTGTACGAGTTCATGCCTAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTCGCTTTCCTGCACGCCTCGGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTTCTTGATGGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCTAAATTAGGACCATCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGCACCTATGGTTATGCTGCTCCAGAATATATCGCTACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGCACTTGACACAAGAAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGACCAAACCCTGTCTCTCTTCCAAAAAGAAGTTGAAAACAATTATGGATGCTAAGATACAGGGTCAATATTCTCCCAAAGCTGCATTCCAAGCAGCACAACTTACTCTAAAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCTATTGAAACCATCCATGAAAAATCCAAGGAATCCAAAACCCGCAATTCTCACCACATTTCTCATCAGCATCCCCGGCAGAGAGTTGTGAGGGTATAA 1197 0.4787 MGLCFSSSSSPPPNPPNYSGSTSNVGFSATTSSFGKSQFSEIASGSIDSEGSLPFCSPDGQILERPNLKEFSFGDLKSAAKSFKGDTLLGEGGFGRVYKGWLDEKNLTPAKPGSGMVVAIKKLNPESTQGFQEWKSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKPCLSSKKKLKTIMDAKIQGQYSPKAAFQAAQLTLKCLEHDPKQRPSMKEVLEGLEAIETIHEKSKESKTRNSHHISHQHPRQRVVRV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03461 398 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Viun3g03461 398 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Viun3g03461 398 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Viun3g03461 398 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03461 398 FunFam Serine/threonine-protein kinase BIK1 51 168 - -
Viun3g03461 398 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03461 398 Gene3D Transferase(Phosphotransferase) domain 1 169 394 - -
Viun3g03461 398 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Viun3g03461 398 MobiDBLite consensus disorder prediction 374 398 - -
Viun3g03461 398 PANTHER OS01G0588500 PROTEIN-RELATED 33 369 - -
Viun3g03461 398 Pfam Protein tyrosine and serine/threonine kinase 87 364 IPR001245 GO:0004672|GO:0006468
Viun3g03461 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Viun3g03461 398 CDD STKc_IRAK 89 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03461 Viun-Chr3 41630391 41634593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03461 59 365 Glycoside Hydrolase AT3G07070 49.351 2.80e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g03461 PK_Tyr_Ser-Thr 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03461 - - gmx:100794193 693.73