Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03456 ATGCCGAAAGTCAAAGCTGATACTAAAGCTGCTGATAACAGGTTGAAGCGCAAGGGCGCTGGCGCTGGTAGGAAACAATCGAAGAAGGCTGCTAAGGATCCTAACAAGCCGAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACACCCAAACAACAAATCTGTTGCTGTTGTTGGCAAAGCTGGTGGTGACAAATGGAAATCTCTGTCTGACGCGGAAAAGGCACCCTTCATTGCTAGGGCTGAGAAGAAAAAAGAAGAGTATGAGAAGAGCATCTCGGCGTATAATAAGAAATTGGAAGGAAAACATTCAGAGGAAGAAGAATCTGACAAGTCGAAATCTGAGGTTAACGACGAGGAGGAAGATGAGGAGGATGATGAAGATGATGAGTGA 423 0.4515 MPKVKADTKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEKAPFIARAEKKKEEYEKSISAYNKKLEGKHSEEEESDKSKSEVNDEEEDEEDDEDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03456 140 MobiDBLite consensus disorder prediction 105 121 - -
Viun3g03456 140 Coils Coil 88 132 - -
Viun3g03456 140 SUPERFAMILY HMG-box 25 108 IPR036910 -
Viun3g03456 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 139 IPR031061 -
Viun3g03456 140 Gene3D High mobility group box domain 32 109 IPR036910 -
Viun3g03456 140 CDD HMG-box_AtHMGB1-like 38 91 - -
Viun3g03456 140 MobiDBLite consensus disorder prediction 1 19 - -
Viun3g03456 140 MobiDBLite consensus disorder prediction 1 43 - -
Viun3g03456 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Viun3g03456 140 MobiDBLite consensus disorder prediction 105 140 - -
Viun3g03456 140 MobiDBLite consensus disorder prediction 57 86 - -
Viun3g03456 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Viun3g03456 140 MobiDBLite consensus disorder prediction 122 140 - -
Viun3g03456 140 SMART hmgende2 36 107 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03456 Viun-Chr3 41580438 41581949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun3g03456 HMG_box 7.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03456 K25507 - gmx:100499992 196.438