Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03443 ATGCCCCTACGCACACAAAACCTTTGTAAGTGTGTGGAGACACTTGTTGTGTTCTTCTATTTCACTCGAAGCCTTCAGAATCATCTGTGTATTCACATTTTTCAAAGACAATACACCATGAGAAAGATTTGGTTTCTTGTCCTCGTCATGTTCTACCATGGCTTTCCTTCAAAGGGAATCAGCAGTGTTTCTACAAGACCAAGAACTGTTAACGTAGGCGCACTCATGTCCTTCAATTCAACAGTTGGGAGAGTGGCTAAGGTTGCTATAGAAGCTGCAGTGGATGATGTGAACTCAGATGCAACGATTCTTAATGGAACTGAGCTAAAGATTTTAATGTTGGACACCAAATTATCCACTGGGTTCCTAGGAATCGTTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCCGTGATGGCTCATGTGATTTCACACATTGCAAATGAGATGCAAGTGCCTCTCCTATCATTTGCAGCCACGGACCCCACACTCACTTCACTGCAGTTCCCATATTTTGTTAGGACAACGCAGAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATTGATGATGATCATGGAAGAAATGGGGTGTCCGCTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCACCACTTAAGCCTGGTAACATTACTCGGGAAGATATAAACAGTGCACTAGTTAAGATAGCTCTAATGGAATCAAGGGTAATAGTCCTTCACATATACCCTTCGTTTGGTCTAGATGTATTGAATGTGGCTCGGTCACTTGGCATGATGGTAAATGGCTATGTGTGGATTGCCACAGATTGGCTTTCTACAGTAATAGATTCAGACCCATCCTTGTCAACATCTCCAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACCCCTGACTCAGAAATGAAAAGAAAATTTAGTTCTGGTTGGAACAAAGTGAGCAAGGAAAAGGATCCTGTTGAGGGTCCTTTGGCATTGAACAGCTTTGGGTTTTACGCCTACGACACAGTTTGGGTGCTTGCTTCTGCACTGGATGCGTTTTTCAGGAGTGGGGGAACTTTGTCATTTTCAAACGATTCAAGTCTAAACATGTTAAGAGGGGGGAGTTTTGAGCTTGATACGATGGGAGTGTTTGTTGATGGTGAGAAGCTGCTTAAAAAAATATTGGAGGTGAACAGAAGTGGTGTAACGGGCCAAATGATGTTTGGTGAAGATGGAAACTTAGTGCATTCATCATATGAAGTCATTAATGTGATAGGAAGTGGGATTAGGAGGATTGGTTTCTGGTCTGAAACTTCTGGCCTCCACACTGGGGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGCGTCATCTGGCCTGGTCAAACAACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGTGTGCCACTTAGAATTAGTTACCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGCTATTGCGTAGATGTGTTCACTGCTGCTCTCAGCCTGTTGCCTTATCCCGTTCCCTACAAGTTTGTTTCATTTGGAGATGGTAAAACCAACCCACCAAATGCAAAACTCCTCAACATGATCACTGTTGGGGAGTTCGATGCTGTTGTTGGGGACATTACCATTACCACAAACCGAACAAAGATAGTGGATTTTACACAGCCATATATTGAGTCGGGGCTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTATGGATTCTGGAGCGTCGCTTAAATGATGACTTCAGAGGCCCAGCCAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATCGAGAGAAAACTGTGAGCACCCTTGGTCGCTTGGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTGAATTCAAGCTACATTGCAAGCCTGACCTCAATCCTAACAGTGGAACAGCTCTCATCCTCAGTTAAGGGAATCGAAAGCTTAGCAACAAGCGATGAACGGATTGGTTTCTTGAGTGGCTCCTTTGCTGAAAATTATCTGACAGAGGAGCTGAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAGGCCTTGAAAGATGGTCCTGCTAACGGTGGTGTCACTGCCATAATAGATGAACGTGCATACATGGAACTCTTCCTGGCTACCAGATGCGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTCGCCTTCCCGAGAGACTCTCCCCTGGCAATTGACATGTCCACTGCGATCTTAAAACTTTCAGAGAATGGTGATCTTCAGAGAATTCACGACAAATGGCTAACCAGAAGTGCTTGTAGCTCAGAGGGTGCAAAACAGGGCATAGACCGACTTGAGCTGAAAAGCTTTTGGGGTCTGTTTCTACTTAGTGGCATGGCATGCTTCATTGCTCTTCTTTGTTATGCTATTCGAATGGTTTACCGTTTTAGCAGACACTCCAACAGTAACTCCAAAGGCTCTTCACACTCTGCTCGTCTTCGATCATTCTTCACCTTTGTCAATGAAAGAGAAGAGGAAGACAAACATATGTCAAAGAGAAAACGAACCGAAAAGGGATCTAGTGGTAGGGTGGCGCATGAAGAAGAATTTGATGGCCCCACCGTTAGTGTCCGTCTTCAAAATTAG 2880 0.4399 MPLRTQNLCKCVETLVVFFYFTRSLQNHLCIHIFQRQYTMRKIWFLVLVMFYHGFPSKGISSVSTRPRTVNVGALMSFNSTVGRVAKVAIEAAVDDVNSDATILNGTELKILMLDTKLSTGFLGIVDSLRLMENDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSALGDKLAEKRGKISHKAPLKPGNITREDINSALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMVNGYVWIATDWLSTVIDSDPSLSTSPAMNDIQGVITLRMYTPDSEMKRKFSSGWNKVSKEKDPVEGPLALNSFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDTMGVFVDGEKLLKKILEVNRSGVTGQMMFGEDGNLVHSSYEVINVIGSGIRRIGFWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCVDVFTAALSLLPYPVPYKFVSFGDGKTNPPNAKLLNMITVGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSDERIGFLSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGMACFIALLCYAIRMVYRFSRHSNSNSKGSSHSARLRSFFTFVNEREEEDKHMSKRKRTEKGSSGRVAHEEEFDGPTVSVRLQN 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03443 959 Gene3D - 764 853 - -
Viun3g03443 959 SMART GluR_14 507 848 IPR001320 GO:0015276|GO:0016020
Viun3g03443 959 Pfam Ligand-gated ion channel 848 878 IPR001320 GO:0015276|GO:0016020
Viun3g03443 959 Gene3D - 88 441 - -
Viun3g03443 959 Gene3D - 186 466 - -
Viun3g03443 959 FunFam Glutamate receptor 743 850 - -
Viun3g03443 959 Pfam Bacterial extracellular solute-binding proteins, family 3 530 847 IPR001638 -
Viun3g03443 959 Gene3D - 506 616 - -
Viun3g03443 959 Gene3D - 617 751 - -
Viun3g03443 959 SUPERFAMILY Periplasmic binding protein-like II 482 848 - -
Viun3g03443 959 CDD PBP1_GABAb_receptor_plant 71 466 IPR044440 -
Viun3g03443 959 MobiDBLite consensus disorder prediction 923 951 - -
Viun3g03443 959 PIRSF IGluLR_plant 39 954 IPR017103 -
Viun3g03443 959 FunFam Glutamate receptor 501 617 - -
Viun3g03443 959 FunFam Glutamate receptor 186 345 - -
Viun3g03443 959 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 70 908 IPR015683 -
Viun3g03443 959 CDD GluR_Plant 504 846 - -
Viun3g03443 959 MobiDBLite consensus disorder prediction 923 959 - -
Viun3g03443 959 SUPERFAMILY Periplasmic binding protein-like I 66 497 IPR028082 -
Viun3g03443 959 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 144 172 - -
Viun3g03443 959 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 364 376 - -
Viun3g03443 959 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 83 99 - -
Viun3g03443 959 FunFam Glutamate receptor 617 747 - -
Viun3g03443 959 Pfam Receptor family ligand binding region 88 451 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03443 Viun-Chr3 41479343 41482925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03443 44 933 Ion Channels AT3G51480 56.841 0.0 1063