Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03441 ATGTCAGACATAAACTACAACTATATATATTTCATGAAAAATACAATGAGCAAAGTTTTGCTGCTTTTCCTTGTCGTCCTCTACAGTGGTCTTCCCTCAAAAGGAATCAGCTCTGTTTCTACAAGACCACGTGCTGTTAACATTGGGGCAATCTTATCTTTCAACTCTACAATTGGCAGAGTAGCTAAAATTGCCATACAATCTGCAGTGGATGATATAAATTCTAATCCAACCATTCTCAACGGAACTAAGCTCAAGATTTCAATGCTAGACACCAAATTATCCGCTGGATTCTTAGGAATCATTGATTCCTTTCTGCTGATGGAGCGTGAAACTGCTGCCATAATTGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACATATAGCAAATGAGATGCAGGTGCCTCTACTTTCATTTGCAGCAACAGACCCTACGCTGACTTCACTGCAGTTTCCATATTTTGTTCGGACAACACAGAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTGGATCACTTTCAATGGAGAGATGTAATAGCCATTTACATTGACGATGATCATGGAAGAAATGGGGTGTCCGTTTTAGGGGATAAGCTGGCAGAGAAACGTGGTAAAATATCACACAAAGCACCACTTAACCCTGGTAACATTACTCGGGAAGATATAAACGGTGCACTAGTTAAGATAGCTTTAATGGAATCAAGGGTAATAGTCCTTCATATATACCCTTCTTTTGGGCTAGATGTCTTGAATGTGGCTCGTTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATTGCCACAGATTGGCTTTCTACAGTAATAGATTCAGACCCATCCCTGTCAACATCTCCAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACCCCTGACTCAGAAATGAAAAGAAAATTTAGTTCGAGATGGAACAAAGTGAGCAAGGAAAAGGATCCTGTTGAGGGTCCTTTGGCATTGAACAGCTTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTAGCTTCTGCACTGGATGCGTTTTTCAGGAGTGGGGGAACTTTGTCATTTTCAAACGATTCAAGTCGAAACATGCTAAGAGGGGGGAGTTTTGAGCTTGATAGCATGGGAGTGTTTGTTGATGGTGAGAAGCTGCTTAAAAAAATATTGGAGGTGAACAGAAGTGGTGTAACGGGCCAAATGATGTTTGGTGAAGATGGAAACTTAGTGCATTCATCATATGAAGTCATTAATGTGATAGGAAGTGGGATTAGGAGGATTGGTTTCTGGTCTGAAACTTCTGGCCTCCACACTGGGGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGCGTCATCTGGCCTGGTCAAACAACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTCCCTCTTAGAATTAGTTACCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCAGCTATCAGGTTGTTGTCTTATCCCGTTCCCTACAAGTTTGTTTCATTTGGAGATGGCAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATCACAGTCGGTGCCTTCGATGCTGTGGTGGGAGACATTACCATTACTACTAACAGAACCAAGATAGTGGACTTTACTCAGCCATATATTGAGTCTGGGCTAGTTGTCGTGGCACCTATTAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCAACTAGAAGACAATTTGTCACCATTATTTGGTTCAGTTTCTCAACCCTATTTTTTGCACATAGAGAAAAAACAGTTAGCACACTTGGTCGCTTTGTGCTGATCATATGGTTGTTTGTGGTTTTGATACTGAACTCAAGCTACATTGCAAGCCTCACCTCCATACTAACTGTGGAACAACTCTCTTCACCGATTAAAGGAATTGAAAGCTTAGTAATAAGCAACGATCGCATAGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGACAGAGGAGCTGAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGGCCAGCTAACGGTGGTGTTGCTGCAATAATAGATGAACGTGCATATATGGAACTCTTCCTAGCCACCAGATGTGAATTCGGTATCGTCGGTCAGGAGTTCACCAAGATGGGATGGGGCTTTGGCTTCCCCAGAGAATCTCCTTTATCAATTGATATGTCAACTGCGATCCTTAAACTATCAGAAAATGGTGACCTCCAAAGAATTCACGACAAATGGCTAACGAGAAGTGCTTGCAGCTCAGAGGGTGGAAAACAAGGCATAGACAGACTTGAGCTAAACAGTTTTTGGGGTCTGTTCCTACTTAGTGGCATGGCATGCTTCGTTGCTCTTCTTTGCTATGGTATTCGAATGGTTTACCGTTTTAGCAGACACTCCAACAGTAGTAACCTTGAACGCTCATCTCACTCTGCTCGTCTTCGATCGTTTCTTTCCTTTGTGAATGAAAGAGAAGAGGAAGACAAATACAGGCCGAAGAGAAGGCGAAGGGAGAAATGCTCTTGTAGAAAGGTGGTGCATGAGGGTGGATCTTTGGATGACTCAACTGTTAGTGTCCTCATAGAAAATAATCCTACTGTACAACATTAA 2832 0.4269 MSDINYNYIYFMKNTMSKVLLLFLVVLYSGLPSKGISSVSTRPRAVNIGAILSFNSTIGRVAKIAIQSAVDDINSNPTILNGTKLKISMLDTKLSAGFLGIIDSFLLMERETAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSVLGDKLAEKRGKISHKAPLNPGNITREDINGALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMGSGYVWIATDWLSTVIDSDPSLSTSPAMNDIQGVITLRMYTPDSEMKRKFSSRWNKVSKEKDPVEGPLALNSFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSRNMLRGGSFELDSMGVFVDGEKLLKKILEVNRSGVTGQMMFGEDGNLVHSSYEVINVIGSGIRRIGFWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAAIRLLSYPVPYKFVSFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPTRRQFVTIIWFSFSTLFFAHREKTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLVISNDRIGFLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLSIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGGKQGIDRLELNSFWGLFLLSGMACFVALLCYGIRMVYRFSRHSNSSNLERSSHSARLRSFLSFVNEREEEDKYRPKRRRREKCSCRKVVHEGGSLDDSTVSVLIENNPTVQH 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03441 943 PIRSF IGluLR_plant 13 937 IPR017103 -
Viun3g03441 943 SMART GluR_14 483 824 IPR001320 GO:0015276|GO:0016020
Viun3g03441 943 Pfam Receptor family ligand binding region 64 427 IPR001828 -
Viun3g03441 943 SUPERFAMILY Voltage-gated potassium channels 605 689 - -
Viun3g03441 943 Gene3D - 482 592 - -
Viun3g03441 943 Gene3D - 744 829 - -
Viun3g03441 943 Gene3D - 64 417 - -
Viun3g03441 943 SUPERFAMILY Periplasmic binding protein-like II 458 824 - -
Viun3g03441 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 881 IPR015683 -
Viun3g03441 943 CDD PBP1_GABAb_receptor_plant 47 442 IPR044440 -
Viun3g03441 943 FunFam Glutamate receptor 162 321 - -
Viun3g03441 943 Gene3D - 162 442 - -
Viun3g03441 943 CDD GluR_Plant 480 822 - -
Viun3g03441 943 Gene3D - 593 727 - -
Viun3g03441 943 FunFam Glutamate receptor 719 826 - -
Viun3g03441 943 Pfam Ligand-gated ion channel 824 854 IPR001320 GO:0015276|GO:0016020
Viun3g03441 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Viun3g03441 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 340 352 - -
Viun3g03441 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 59 75 - -
Viun3g03441 943 FunFam Glutamate receptor 593 723 - -
Viun3g03441 943 Pfam Bacterial extracellular solute-binding proteins, family 3 541 823 IPR001638 -
Viun3g03441 943 FunFam Glutamate receptor 477 593 - -
Viun3g03441 943 SUPERFAMILY Periplasmic binding protein-like I 42 473 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03441 Viun-Chr3 41456099 41459735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03441 21 911 Ion Channels AT3G51480 56.507 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03441 K05387 - gmx:100789442 1538.09