Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03440 ATGTTTCCAGTATATTATAACATGAGCAGAGTTTGGCTTCTTGCCCTTCTCATCCTCTACAGTGCCTTTCCCTCAAAAGGAACCGGCAACGTTTCTACAAGACCGAGTGCCATTAATATTGGGGCAATTTTATCTTTCAACTCCACAGTTGGAAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGAATGATGTAAATTCCAATGCAACCATTCTAAGCGGAACAAAGCTTAATATCTCAATGTTGGACACCAAATTATCCACTGGATTCTTAGGAATCATTGCTTCATTGCGATTGATGGCTAGTGACACAGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTGCTTTCATTTGCAGCGATAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACGACGCAGAGTGATCTGCGTCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGGGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAACGGAGTAGCTGCCTTGGGAGATAAGCTGGCAGAGAAACAAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTTTGGATAGCCACAGATTGGCTAACCACACTAATAGATTCAGACCCATCCTTGTTCACATCTCCAGCCATCAATAACATCCAAGGTGTTGTCACCCTGCGCATGCATACACCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGAGCCAGAAAGAAAATCCTAATCATGATCCTTTAGGGTTAAACATCTTCGGTCTTTACGCGTATGACACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTTAAAAAGTGGAGGAACTTTGTCGTTTTCAAATGATTCTAGTGTAATTAACATGCTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAATGGTAGCATGTTGCTTAAAAAGATTTTAGATTCTAACACAAGTGGTTTAACAGGCCAGATGATGTTTGACTCAGATGGAAATTTAATGCATCAATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCAGAAAATTATGGCCTCCACACTGAGGAAGCTCCTATTCATTCCAATTCTAGTGAAGGACTATATGATGTCATCTGGCCCGGTCAAACAACTCAAACACCACGTGGTTGGAGTTTTGCCAGCAATGGAAGACAATTGAGAGTTGGGGTGACAATGGGACTTACTTTCCGTGAGATTGTGTCAAGAATTGAGGGCACCGATACGTTTAGTGGTTATTGCATAGATGTGTTTACTGCTGCACTGAACTTGATTCCTTACCCGATACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAAACCGTCAAATTCAGAATTTCTTCACATGGTCACAATTGGTGCCTTCGATGCAGTGGTGGGGGACATTACCATTAGTGCAAACCGAGCAAAGATAGTGGATTTTACACAGCCGTATATCGAGTCTGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTCTTCTTGGTGGTTGGAGCTGTTGTGTGGACTTTAGAGCGTGGTACAAACGATGAATTTAGAGGCCCCGCAAGAAGACAATTTGTCACCATTATCTGGTTTAGCTTCTCAACCCTATTTTTCACACAGAAAGAGAACACTGTTAGCACTCTGGGTCGTTTCGTACTAATCATATGGCTGTTCGTGGTTTTGATACTGAACTCAAGCTATATTGCAAGCCTGACCTCCATCCTAACTGTGGAACAGCTCTCATCCCAAGTTAAGGGAATTGAAAGCTTAATAGCAAGTAAAGACCGCATTGGTTTCCCGAGGGATACATATACTGAAAACTATCTAACTGAGGAACTACACATGGACAGATCCAGGCTTGTTGCTCTGAACTCCATGTCAGAATTTGAAAAAGCTTTAAAAGACGGACCAGCTAGAGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGTTGGTCCAGAGTTCACAAGGAGTGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCACTAGCAGTTGACATGTCAACTGCAATCCTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCGTGATAAATGGCTAACAAGAAGGGCTTGCAGCTCCGAAGGCGCAAAAGAAAGCATTGATCGACTTGAGCTGAAAAGCTTTTGGGGGCTTTACCTGCTGATTGGCATGGCCTGCTTCATTGCTCTCCTTTGCTATGTTATTAGATTGATATACCGTTTTAGCAGGCATTCTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCGTTCCTTTCCTTTGTCAATAAAAAAGAAATGGAAGACAAATACAAGCCAAAAGGAGAAGTGCCCTTGTAG 2583 0.4266 MFPVYYNMSRVWLLALLILYSAFPSKGTGNVSTRPSAINIGAILSFNSTVGRVAKVAIQAAVNDVNSNATILSGTKLNISMLDTKLSTGFLGIIASLRLMASDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAAIDPTLTSMQFPYFVRTTQSDLRQMAAVAEIVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKQEVLHVAQSLGMMQSGYVWIATDWLTTLIDSDPSLFTSPAINNIQGVVTLRMHTPDSDIKDKFISRWTKLSQKENPNHDPLGLNIFGLYAYDTVWALAYALDALLKSGGTLSFSNDSSVINMLTGDILHLDAMRVFVNGSMLLKKILDSNTSGLTGQMMFDSDGNLMHQSYEIINVIGSGIRRIGYWSENYGLHTEEAPIHSNSSEGLYDVIWPGQTTQTPRGWSFASNGRQLRVGVTMGLTFREIVSRIEGTDTFSGYCIDVFTAALNLIPYPIPFKFIPFGDGKTKPSNSEFLHMVTIGAFDAVVGDITISANRAKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWTLERGTNDEFRGPARRQFVTIIWFSFSTLFFTQKENTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSQVKGIESLIASKDRIGFPRDTYTENYLTEELHMDRSRLVALNSMSEFEKALKDGPARGGVAAIIDERAYMELFLATRCEFSIVGPEFTRSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIRDKWLTRRACSSEGAKESIDRLELKSFWGLYLLIGMACFIALLCYVIRLIYRFSRHSNSNLEGSSFSSHLRSFLSFVNKKEMEDKYKPKGEVPL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03440 860 FunFam Glutamate receptor 426 542 - -
Viun3g03440 860 FunFam Glutamate receptor 668 775 - -
Viun3g03440 860 Gene3D - 423 541 - -
Viun3g03440 860 PIRSF IGluLR_plant 198 858 IPR017103 -
Viun3g03440 860 PIRSF IGluLR_plant 6 202 IPR017103 -
Viun3g03440 860 SMART GluR_14 430 773 IPR001320 GO:0015276|GO:0016020
Viun3g03440 860 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 826 IPR015683 -
Viun3g03440 860 Pfam Bacterial extracellular solute-binding proteins, family 3 453 772 IPR001638 -
Viun3g03440 860 Gene3D - 199 391 - -
Viun3g03440 860 FunFam Glutamate receptor 542 672 - -
Viun3g03440 860 SUPERFAMILY Periplasmic binding protein-like II 409 772 - -
Viun3g03440 860 Gene3D - 250 366 - -
Viun3g03440 860 Pfam Receptor family ligand binding region 56 198 IPR001828 -
Viun3g03440 860 Gene3D - 154 197 - -
Viun3g03440 860 Pfam Ligand-gated ion channel 773 804 IPR001320 GO:0015276|GO:0016020
Viun3g03440 860 Gene3D - 659 775 - -
Viun3g03440 860 FunFam Glutamate receptor 56 181 - -
Viun3g03440 860 SUPERFAMILY Periplasmic binding protein-like I 34 422 IPR028082 -
Viun3g03440 860 Gene3D - 542 658 - -
Viun3g03440 860 CDD GluR_Plant 429 771 - -
Viun3g03440 860 Gene3D - 56 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03440 Viun-Chr3 41435470 41439197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03440 12 860 Ion Channels AT3G51480 52.053 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03440 K05387 - gmx:100789442 1321.99