Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03439 ATGTTGGCAGTGAAAAAATATAACATGAGCAAAGTTTGGATTCTTGCCCTTCTCATCCTCTACGGTGGCTTTCCCTCAAAAGGAACCGGCAATGTTTCTACAAGACCAAGTGCCATTAATATTGGGGCAATTTTATCTTTCAACTCTACAGTTGGAAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATGTAAATTCCAATGCAACCATTCTAAGCGGAACAAAGCTTAATATCTCAATGTTGGACACCAAATTATCCACTGGATTCCTGGGAATCATTGCTTCATTGCGGTTGATGACGAGTGAAACTGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTGATTTCACACATAGCGAATGAGATGCAAGTGCCTCTGCTTTCATTTGCAGCAACAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACGACGCAGAGTGATCTGCGTCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAACGGAGTAGCTGCCTTGGGAGATAAGCTGGCAGAGAAACAACGTAAAATATCACACAAAGTGCCCTTTAGGCCATATAATATCACCCGAGAAGAAATAAACAGTGCTTTAGTTAAGATAGCAGCTTTAATGGAGTCAAGAGTGATAATCCTTCACATATACCCTTCTTTTGGTGTAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTGTGGATAGCCACAGACTGGCTAACCACACTACTAGATTCAGACCCATCCTTGTTCACATCTCCAGCCATCAATGACATCCAAGGTGTTGTCACCCTGCGCATGCATACACCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGAGCCAGAAAGAAAATCCTAATCAGGATCCTTTTGGATTAAACATCTTCGGTCTTTACGCGTATGACACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTTAAAGGATGGAGGAACTTTGTCGTTTTCAAATGCTTCGAGTGTAATAAACATGTTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAGTGGCAGCATGTTGCTTAAAAAGATTTTAGAGTCTAACACAAGTGGTTTAGCAGGCCAGATGATGTTTGACTCAGATGGAAATTTAATGCATCAATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCAGAAACCTCTGGCCTCCACACTGAGGAAGCTCCTACTCATTCCAATTCTAGCGAAAGACTATACGATGTCATCTGGCCTGGTCAAACAACTCAAACACCACGTGGTTGGAGTTTTGCCAGCAATGGAAGACAATTGAGAATTGGGGTGATAGTTAGAGTTACATTCCCTGAGATTGTGTCAAGAATTGAGGGCACCGATACGTTTAGTGGTTATTGCATAGATGTGTTTACTGCTGCAATGAACTTGTTGCCTTACCCAACACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCGTCACATTCAGACTTTCTTCAAATGGTCACAATTGGTGCATTCGATGGTGTGGTGGGGGACCTGACCATTAGTACAAACCGAGCAAAGATAGTGGATTTTACACAGCCATATATCGAGTCTGGGCTAGTTGTTGTTGCCCCTGTCAAGAAGTTGAAATCCAATGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTCTTCTTGGTGGTGGGAGCTGTTGTGTGGACTTTAGAGCGTGGTACAAACGATGAATTTAGAGGCCCCGCAAGAAGACAATTTGTCACCATTATCTGGTTTAGCTTCTCAACCCTATTTTTCACACAGAATGAGAAGACTGTTAGCACTCTTGGTCGTTTCGTACTAATCATATGGCTGTTTGTGGTTTTGGTACTGACCTCAAGCTACACTGCAAGCCTGACCTCCATCCTAACTGTGGAACAGCTTTCATCCCAATTTAAGGGAATTGAAAGCTTAATAGCAAGTAATGAACCCGTTGGTTTCGTGAAGGATACATTTACTGAAAATTATATAACTGCGGAACTACACATGGACAGATCCAGGCTTGTTCCTCTGAACTCCATGTTAGAATATGAAAAAGCCTTAAAAGATGGACCAGCTAGAGGTGGCGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGCTGGTCAAGAATTCACCAAGAGTGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAGTTGACATGTCAACTGCCATACTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCGTGATAAATGGCTAACAAGAAGGGCTTGCAGCTCAGAAGGCGCAATACAAAGCAATGATCGACTTGAGCTGAAAAGCTTTTGGGGGCTTTACCTGCTGATTGGCATGGCCTGCTTCGTTGCTCTCCTTTGCCATGTTATTAGATTGATGTACCGTTTTAGCAGGCATTTTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCGTTCCTTTCCTTTGCTAACAAAAAAGAAGCAGAAGATACAAGCCAAAGGCAGGACAAAAGGAGAAGTGCCCTTGTAGAAAGGTAG 2736 0.4287 MLAVKKYNMSKVWILALLILYGGFPSKGTGNVSTRPSAINIGAILSFNSTVGRVAKVAIQAAVDDVNSNATILSGTKLNISMLDTKLSTGFLGIIASLRLMTSETVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSMQFPYFVRTTQSDLRQMAAVAEIVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKQRKISHKVPFRPYNITREEINSALVKIAALMESRVIILHIYPSFGVEVLHVAQSLGMMQSGYVWIATDWLTTLLDSDPSLFTSPAINDIQGVVTLRMHTPDSDIKDKFISRWTKLSQKENPNQDPFGLNIFGLYAYDTVWALAYALDALLKDGGTLSFSNASSVINMLTGDILHLDAMRVFVSGSMLLKKILESNTSGLAGQMMFDSDGNLMHQSYEIINVIGSGIRRIGYWSETSGLHTEEAPTHSNSSERLYDVIWPGQTTQTPRGWSFASNGRQLRIGVIVRVTFPEIVSRIEGTDTFSGYCIDVFTAAMNLLPYPTPFKFIPFGDGKTNPSHSDFLQMVTIGAFDGVVGDLTISTNRAKIVDFTQPYIESGLVVVAPVKKLKSNAWAFLRPFTPMMWFVTGMFFLVVGAVVWTLERGTNDEFRGPARRQFVTIIWFSFSTLFFTQNEKTVSTLGRFVLIIWLFVVLVLTSSYTASLTSILTVEQLSSQFKGIESLIASNEPVGFVKDTFTENYITAELHMDRSRLVPLNSMLEYEKALKDGPARGGVAAIIDERAYMELFLATRCEFSIAGQEFTKSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIRDKWLTRRACSSEGAIQSNDRLELKSFWGLYLLIGMACFVALLCHVIRLMYRFSRHFNSNLEGSSFSSHLRSFLSFANKKEAEDTSQRQDKRRSALVER 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03439 911 Pfam Receptor family ligand binding region 57 422 IPR001828 -
Viun3g03439 911 CDD PBP1_GABAb_receptor_plant 40 437 IPR044440 -
Viun3g03439 911 FunFam Glutamate receptor 714 821 - -
Viun3g03439 911 Pfam Ligand-gated ion channel 819 850 IPR001320 GO:0015276|GO:0016020
Viun3g03439 911 CDD GluR_Plant 475 817 - -
Viun3g03439 911 Gene3D - 155 437 - -
Viun3g03439 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 890 IPR015683 -
Viun3g03439 911 FunFam Glutamate receptor 472 588 - -
Viun3g03439 911 FunFam Glutamate receptor 588 718 - -
Viun3g03439 911 SUPERFAMILY Periplasmic binding protein-like I 35 468 IPR028082 -
Viun3g03439 911 Gene3D - 57 412 - -
Viun3g03439 911 Pfam Bacterial extracellular solute-binding proteins, family 3 497 818 IPR001638 -
Viun3g03439 911 SMART GluR_14 476 819 IPR001320 GO:0015276|GO:0016020
Viun3g03439 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 334 346 - -
Viun3g03439 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 113 141 - -
Viun3g03439 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 52 68 - -
Viun3g03439 911 Gene3D - 755 824 - -
Viun3g03439 911 Gene3D - 588 715 - -
Viun3g03439 911 SUPERFAMILY Periplasmic binding protein-like II 455 818 - -
Viun3g03439 911 Gene3D - 468 587 - -
Viun3g03439 911 PIRSF IGluLR_plant 7 911 IPR017103 -
Viun3g03439 911 FunFam Glutamate receptor 155 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03439 Viun-Chr3 41414939 41418754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03439 13 905 Ion Channels AT3G51480 53.769 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03439 K05387 - gmx:100789442 1394.79