Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03438 ATGAGCAAAGTTTGGATTCTTGCCCTTCTCATCCTCTACGGTGGCTTTCCCTCAAAAGGAACCGGCAATGTTTCTACAAGACCAAGTGCCATTAATATTGGGGCAATTTTATCTTTCAACTCTACAGTTGGAAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATGTAAATTCCAATGCAACCATTCTAAGCGGAACAAAGCTTAATATCTCAATGTTGGACACCAAATTATCCACTGGATTCCTGGGAATCATTGCTTCATTGCGGTTGATGACGAGTGAAACTGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTGATTTCACACATAGCGAATGAGATGCAAGTGCCTCTGCTTTCATTTGCAGCAACAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACGACGCAGAGTGATCTGCGTCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAACGGAGTAGCTGCCTTGGGAGATAAGCTGGCAGAGAAACAACGTAAAATATCACACAAAGTGCCCTTTAGGCCATATAATATCACCCGAGAAGAAATAAACAGTGCTTTAGTTAAGATAGCAGCTTTAATGGAGTCAAGAGTGATAATCCTTCACATATACCCTTCTTTTGGTGTAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTGTGGATAGCCACAGACTGGCTAACCACACTACTAGATTCAGACCCATCCTTGTTCACATCTCCAGCCATCAATGACATCCAAGGTGTTGTCACCCTGCGCATGCATACACCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGAGCCAGAAAGAAAATCCTAATCAGGATCCTTTTGGATTAAACATCTTCGGTCTTTACGCGTATGACACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTTAAAGGATGGAGGAACTTTGTCGTTTTCAAATGCTTCGAGTGTAATAAACATGTTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAGTGGCAGCATGTTGCTTAAAAAGATTTTAGAGTCTAACACAAGTGGTTTAGCAGGCCAGATGATGTTTGACTCAGATGGAAATTTAATGCATCAATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCAGAAACCTCTGGCCTCCACACTGAGGAAGCTCCTACTCATTCCAATTCTAGCGAAAGACTATACGATGTCATCTGGCCTGGTCAAACAACTCAAACACCACGTGGTTGGAGTTTTGCCAGCAATGGAAGACAATTGAGAATTGGGGTGATAGTTAGAGTTACATTCCCTGAGATTGTGTCAAGAATTGAGGGCACCGATACGTTTAGTGGTTATTGCATAGATGTGTTTACTGCTGCAATGAACTTGTTGCCTTACCCAACACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCGTCACATTCAGACTTTCTTCAAATGGTCACAATTGGTGCATTCGATGGTGTGGTGGGGGACCTGACCATTAGTACAAACCGAGCAAAGATAGTGGATTTTACACAGCCATATATCGAGTCTGGGCTAGTTGTTGTTGCCCCTGTCAAGAAGTTGAAATCCAATGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTCTTCTTGGTGGTGGGAGCTGTTGTGTGGACTTTAGAGCGTGGTACAAACGATGAATTTAGAGGCCCCGCAAGAAGACAATTTGTCACCATTATCTGGTTTAGCTTCTCAACCCTATTTTTCACACAGAATGAGAAGACTGTTAGCACTCTTGGTCGTTTCGTACTAATCATATGGCTGTTTGTGGTTTTGGTACTGACCTCAAGCTACACTGCAAGCCTGACCTCCATCCTAACTGTGGAACAGCTTTCATCCCAATTTAAGGGAATTGAAAGCTTAATAGCAAGTAATGAACCCGTTGGTTTCGTGAAGGATACATTTACTGAAAATTATATAACTGCGGAACTACACATGGACAGATCCAGGCTTGTTCCTCTGAACTCCATGTTAGAATATGAAAAAGCCTTAAAAGATGGACCAGCTAGAGGTGGCGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGCTGGTCAAGAATTCACCAAGAGTGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAGTTGACATGTCAACTGCCATACTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCGTGATAAATGGCTAACAAGAAGGGCTTGCAGCTCAGAAGGCGCAATACAAAGCAATGATCGACTTGAGCTGAAAAGCTTTTGGGGGCTTTACCTGCTGATTGGCATGGCCTGCTTCGTTGCTCTCCTTTGCCATGTTATTAGATTGATGTACCGTTTTAGCAGGCATTTTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCGTTCCTTTCCTTTGCTAACAAAAAAGAAGCAGAAGATACAAGCCAAAGGCAGGACAAAAGGAGAAGTGCCCTTGTAGAAAGGTAG 2712 0.4299 MSKVWILALLILYGGFPSKGTGNVSTRPSAINIGAILSFNSTVGRVAKVAIQAAVDDVNSNATILSGTKLNISMLDTKLSTGFLGIIASLRLMTSETVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSMQFPYFVRTTQSDLRQMAAVAEIVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKQRKISHKVPFRPYNITREEINSALVKIAALMESRVIILHIYPSFGVEVLHVAQSLGMMQSGYVWIATDWLTTLLDSDPSLFTSPAINDIQGVVTLRMHTPDSDIKDKFISRWTKLSQKENPNQDPFGLNIFGLYAYDTVWALAYALDALLKDGGTLSFSNASSVINMLTGDILHLDAMRVFVSGSMLLKKILESNTSGLAGQMMFDSDGNLMHQSYEIINVIGSGIRRIGYWSETSGLHTEEAPTHSNSSERLYDVIWPGQTTQTPRGWSFASNGRQLRIGVIVRVTFPEIVSRIEGTDTFSGYCIDVFTAAMNLLPYPTPFKFIPFGDGKTNPSHSDFLQMVTIGAFDGVVGDLTISTNRAKIVDFTQPYIESGLVVVAPVKKLKSNAWAFLRPFTPMMWFVTGMFFLVVGAVVWTLERGTNDEFRGPARRQFVTIIWFSFSTLFFTQNEKTVSTLGRFVLIIWLFVVLVLTSSYTASLTSILTVEQLSSQFKGIESLIASNEPVGFVKDTFTENYITAELHMDRSRLVPLNSMLEYEKALKDGPARGGVAAIIDERAYMELFLATRCEFSIAGQEFTKSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIRDKWLTRRACSSEGAIQSNDRLELKSFWGLYLLIGMACFVALLCHVIRLMYRFSRHFNSNLEGSSFSSHLRSFLSFANKKEAEDTSQRQDKRRSALVER 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03438 903 SUPERFAMILY Periplasmic binding protein-like II 447 810 - -
Viun3g03438 903 CDD PBP1_GABAb_receptor_plant 32 429 IPR044440 -
Viun3g03438 903 Pfam Receptor family ligand binding region 49 414 IPR001828 -
Viun3g03438 903 Pfam Bacterial extracellular solute-binding proteins, family 3 489 810 IPR001638 -
Viun3g03438 903 FunFam Glutamate receptor 147 307 - -
Viun3g03438 903 Gene3D - 49 404 - -
Viun3g03438 903 Gene3D - 580 707 - -
Viun3g03438 903 CDD GluR_Plant 467 809 - -
Viun3g03438 903 PIRSF IGluLR_plant 1 903 IPR017103 -
Viun3g03438 903 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 882 IPR015683 -
Viun3g03438 903 SMART GluR_14 468 811 IPR001320 GO:0015276|GO:0016020
Viun3g03438 903 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Viun3g03438 903 FunFam Glutamate receptor 580 710 - -
Viun3g03438 903 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Viun3g03438 903 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Viun3g03438 903 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Viun3g03438 903 FunFam Glutamate receptor 706 813 - -
Viun3g03438 903 Gene3D - 460 579 - -
Viun3g03438 903 Gene3D - 747 816 - -
Viun3g03438 903 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Viun3g03438 903 Gene3D - 147 429 - -
Viun3g03438 903 FunFam Glutamate receptor 464 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03438 Viun-Chr3 41414939 41418871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03438 25 897 Ion Channels AT1G42540 55.543 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03438 K05387 - gmx:100789442 1394.79