Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03434 ATGATTAGAGTTGAGATTGTGGTGTTGATGGTTCTCTTCGAAGGGTTATTTTCAGCTGGAGCTGTATCAGATAATTCCACAATACCTGCTTTGGTAAACATAGGAGTTCTCTATTCTTTCAATACCAGTGTTGGTAAAATGGTGAAAACTGCTGTAGAGGCGGCGGTTGAAGATGTAAATTCTGATCCATCTATTCTTGCTCAAACTAAGTTGAAGCTCTCAATGCAAGAAGATACCAAATACAGAGGGTTTTTGAGCATTGCAGAGGCCTTGCAGCTGATGGCGACACAAACTGTGGCTATAATTGGCCCCCAAACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTTCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACCCTTTCTTCTCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGATGTCTATCAAATGACTGCAATAGCAGACCTTGTTAACTACTTTCAATGGAGAGAGGTTATTGCAGTTTATGGTGACGATGACCATGGGAGGAATGGAATGGGTGCATTAGGGGATAAGCTTGCGGAGAGGCGTTGCAAGATTTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGAGAGGAGATTACTGATGTACTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTCTTGAGTGTGGCAAAGTCTCTGGGGATGATGGAAAATGGCTATGTCTGGATAACAACTACTTTTCTCTCTACTTGGCTGGATATACGTAGTCCTCTATCTCCAGATACAACCAATGACATGCAAGGGGTCATTGCACTGCGTATGTATGTACCAGATTCAAAGCTCAAAAGATGGTTTATTTCTAGGTGGACAAACGTGACTACTTCTGGAAAGAATGGTAATGGTACCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAACGAGGGAATCAAATTACATTTTCACATGATCCAAAGTTATCTCAAATACGTGGAGACAACATGCATCTTGATGCTGTGAAGATCTTTAACGAAGGAAATCTGCTGCGTAAACATATTTATGAGGTTAATATGACTGGAGTATCAGGCCTATTCAAGTATGATTCTGATGGAAACCTTGTTAATCCAGCGTATGAAATCATCAATGTGATTGGAACAGGAACACGGAGGATTGGTTATTGGTCTAATTACACTGGATTATCCATTGTTCCTCCAGAAACACTTTATTCAAAGCCACCTAATCGGTCCAGTGCAAGCCAAAAGCTACTCCCTGTGTTTTGGCCAGGGGAAACAACCCAAAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTACCGGGATTTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCGGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAACTTGTCCGTCTTATCACAGCGGATGTTTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCATCAGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTCAAACCATTTACGCCAATGATGTGGACTGTTACAGCTATATTTTTTCTATTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGAACTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGTTTTTCGACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCTAGCCTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGACAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAACTTATTTGATTGAGGAAATTGGTATTGATGAATCCAGACTGGTTCCTCTGAAAACACCGGAAGAAACTGCAACAGCACTCAAAAATGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAACTTTTCCTTTCAAGCCGGTGCGACTTTAGCATTGTAGGTCAAGAGTTCACCCGCAATGGTTGGGGATTTGCCTTTCCACGGGACTCACCATTAGCGGTTGATCTTTCAACTGCCATATTGGAGTTGGCAGAGAACGGAGACTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGTTTATCACAAGGTGCAAAGCTTGAAGTGGATAGACTCAAGCTGAGAAGTTTCTGGGGCCTGTATCTGGTGTGTGGGTTGGCATGTGTGCTTGCTCTTCTCATATATCTTGTTCAGACCATGAGACAGTACTCCAAGCATGGGCCAGAGGAACTTGAGTCTCCTGGCCATGGCTCAGGATCTTCACGTCTGCGCACATTCCTTTCCTTTGTAGATGAAAAGGAAGAGATTGTTAAGAGCCGTGTGAAGAGAAAGAAGATAGAGGGCATGTCCTACAGGAGCACAAGAGAAGTAGGATCATCCATCACCTCCAACAAAGGATATTCTCAGGCATCATCAAACAGAATTGATTCAGCTACTGAAATCTAA 2820 0.4206 MIRVEIVVLMVLFEGLFSAGAVSDNSTIPALVNIGVLYSFNTSVGKMVKTAVEAAVEDVNSDPSILAQTKLKLSMQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDVYQMTAIADLVNYFQWREVIAVYGDDDHGRNGMGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIRSPLSPDTTNDMQGVIALRMYVPDSKLKRWFISRWTNVTTSGKNGNGTLGLSTYGIFAYDTVFALAHALDAFFKRGNQITFSHDPKLSQIRGDNMHLDAVKIFNEGNLLRKHIYEVNMTGVSGLFKYDSDGNLVNPAYEIINVIGTGTRRIGYWSNYTGLSIVPPETLYSKPPNRSSASQKLLPVFWPGETTQKPRGWVFPNNGRMLKIGVPKRVSYRDFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELVRLITADVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFKPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGTPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIDSLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETATALKNGPQKGGVAAYVDERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLRSFWGLYLVCGLACVLALLIYLVQTMRQYSKHGPEELESPGHGSGSSRLRTFLSFVDEKEEIVKSRVKRKKIEGMSYRSTREVGSSITSNKGYSQASSNRIDSATEI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03434 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Viun3g03434 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Viun3g03434 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Viun3g03434 939 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Viun3g03434 939 Gene3D - 468 583 - -
Viun3g03434 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 888 IPR015683 -
Viun3g03434 939 FunFam Glutamate receptor 584 714 - -
Viun3g03434 939 Pfam Bacterial extracellular solute-binding proteins, family 3 530 813 IPR001638 -
Viun3g03434 939 FunFam Glutamate receptor 710 817 - -
Viun3g03434 939 SUPERFAMILY Periplasmic binding protein-like I 29 465 IPR028082 -
Viun3g03434 939 Gene3D - 148 426 - -
Viun3g03434 939 Gene3D - 755 820 - -
Viun3g03434 939 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Viun3g03434 939 CDD GluR_Plant 471 813 - -
Viun3g03434 939 MobiDBLite consensus disorder prediction 911 939 - -
Viun3g03434 939 Gene3D - 50 401 - -
Viun3g03434 939 Pfam Receptor family ligand binding region 48 411 IPR001828 -
Viun3g03434 939 FunFam Glutamate receptor 468 584 - -
Viun3g03434 939 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Viun3g03434 939 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
Viun3g03434 939 Gene3D - 584 712 - -
Viun3g03434 939 PIRSF IGluLR_plant 1 938 IPR017103 -
Viun3g03434 939 FunFam Glutamate receptor 148 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03434 Viun-Chr3 41394262 41399349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03434 26 903 Ion Channels AT3G51480 59.773 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03434 K05387 - gmx:100788917 1698.72