Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03428 ATGACACGCGGGCTCAGACTCCTCCAATCCCAGGCGGCGCCACCTCCTGAGGTCGCCGCCGCCGCCGTCGAGTCCGACTTTGTGGTCATCCTGGCAGCGCTCCTCTGCGCCCTCATTTGCGTGGTGGGCCTCGTCGCCATCGCTCGCTGCGCCTGGCTCCGTCGGGCACCAGCTTACGTCGGCGGCGGTGGATCTCCGCCGGCGCCGGCGAACAAGGGACTGAAGAAGAGAGTGGTGAATTCGCTGCCGAAGTTCACGTACGCCGGCGAAGGTGATCGGTGCAAGTGGACGGAGTGCCCGATCTGCCTGACGGAATTTTCCGGCGGCGACGAGGTCCGTGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCTCTTCGCACTCCTCGTGCCCCTCGTGCCGCGCGCCCTTCGTCGTCGCCCGCTGCCAGAAGTGCGGCCACTTCCCGGCGGTCGCAGCCGAAACCAGCGAACCGCAGACGAAGCCCGGTGGCGGCTGCAATGCCGATGATAATCGTAATGTAATTGTTAACCACGTTAGTAATTACGGTTTCTTGCCATGA 582 0.6495 MTRGLRLLQSQAAPPPEVAAAAVESDFVVILAALLCALICVVGLVAIARCAWLRRAPAYVGGGGSPPAPANKGLKKRVVNSLPKFTYAGEGDRCKWTECPICLTEFSGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVARCQKCGHFPAVAAETSEPQTKPGGGCNADDNRNVIVNHVSNYGFLP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03428 193 CDD RING-H2_EL5-like 98 141 - -
Viun3g03428 193 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Viun3g03428 193 Pfam Ring finger domain 98 141 IPR001841 -
Viun3g03428 193 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 153 - -
Viun3g03428 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 151 IPR013083 -
Viun3g03428 193 SMART ring_2 99 140 IPR001841 -
Viun3g03428 193 SUPERFAMILY RING/U-box 81 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03428 Viun-Chr3 41314548 41315456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03428 1 152 C3H Transcription Factor Family AT1G20823 60.976 2.14e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03428 - - gmx:100813341 281.952