Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03417 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGTGGAAGAAGTTTTGGCTGAAGCACAGGTTGAACCAGAAGTTTTGGCTGCTCCTTTGTCCGTAGGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTGTGGAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAAGTCGGTCCCTGTAATGGACAATGTTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGATGAACTTCCTAAGAGTGATAAGGACATAGCAAATGATTCTAATGTTTGTCAAAATAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTTGAAGTGGCTGAAAGTAAAAATTGCAATAATGGTGACTCCAATTCCGCACACCCTATTCATAACGAACCTAAAACACCACATGCTGTTCAGACTGATATAAGAGCTGAAGTCAAGACTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCACATGCAGATAATGGAAACTCAATCTCACAGAACTTGTATTTTTTGGATCCTGAGTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGTTATGGAGATCTGTAAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATAATGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGTAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGATTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAACATTCTGATAATCCATGGGGGGTCACACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1530 0.4196 MSDTKENEEAGQNVPLAVEEVLAEAQVEPEVLAAPLSVGDTSNHAENGKVEAEAPVEDRIVKPEANSECIPQQDVLNSQNTIKSVPVMDNVPVLNKTEGENALDVKSKVDELPKSDKDIANDSNVCQNNADPAEMTVEVKPKAFEVAESKNCNNGDSNSAHPIHNEPKTPHAVQTDIRAEVKTGLDDENKYNERQAAVAHADNGNSISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNNENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVIDIGPPADWVKINVQKTVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03417 509 SMART ARID_2 225 315 - -
Viun3g03417 509 CDD ARID 230 315 - -
Viun3g03417 509 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 508 IPR045147 GO:0006357
Viun3g03417 509 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Viun3g03417 509 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Viun3g03417 509 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Viun3g03417 509 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Viun3g03417 509 SMART bright_3 229 320 IPR001606 GO:0003677
Viun3g03417 509 Gene3D - 228 326 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03417 Viun-Chr3 41133891 41142520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03417 212 507 ARID Transcription Factor Family AT1G76510 56.688 3.50e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun3g03417 ARID 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03417 - - gmx:100803374 791.956