Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03416 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGTGGAAGAAGTTTTGGCTGAAGCACAGGTTGAACCAGAAGTTTTGGCTGCTCCTTTGTCCGTAGGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTGTGGAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAAGTCGGTCCCTGTAATGGACAATGTTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGATGAACTTCCTAAGAGTGATAAGGACATAGCAAATGATTCTAATGTTTGTCAAAATAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTTGAAGTGGCTGAAAGTAAAAATTGCAATAATGGTGACTCCAATTCCGCACACCCTATTCATAACGAACCTAAAACACCACATGCTGTTCAGACTGATATAAGAGCTGAAGTCAAGACTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCACATGCAGATAATGGAAACTCAATCTCACAGAACTTGTATTTTTTGGATCCTGAGTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGTTATGGAGATCTGTAAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATAATGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGTAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGATTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTGTATGCATTGGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAACATTCTGATAATCCATGGGGGGTCACACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1581 0.4213 MSDTKENEEAGQNVPLAVEEVLAEAQVEPEVLAAPLSVGDTSNHAENGKVEAEAPVEDRIVKPEANSECIPQQDVLNSQNTIKSVPVMDNVPVLNKTEGENALDVKSKVDELPKSDKDIANDSNVCQNNADPAEMTVEVKPKAFEVAESKNCNNGDSNSAHPIHNEPKTPHAVQTDIRAEVKTGLDDENKYNERQAAVAHADNGNSISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNNENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03416 526 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 426 526 IPR002068 -
Viun3g03416 526 Pfam Hsp20/alpha crystallin family 443 525 IPR002068 -
Viun3g03416 526 CDD ARID 230 315 - -
Viun3g03416 526 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Viun3g03416 526 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Viun3g03416 526 SUPERFAMILY HSP20-like chaperones 435 522 IPR008978 -
Viun3g03416 526 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 525 IPR045147 GO:0006357
Viun3g03416 526 FunFam AT-rich interactive domain-containing protein 3 418 526 - -
Viun3g03416 526 SMART bright_3 229 320 IPR001606 GO:0003677
Viun3g03416 526 SMART ARID_2 225 315 - -
Viun3g03416 526 CDD ACD_sHsps_p23-like 445 521 - -
Viun3g03416 526 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Viun3g03416 526 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Viun3g03416 526 Gene3D - 228 326 IPR036431 GO:0003677
Viun3g03416 526 Gene3D - 389 526 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03416 Viun-Chr3 41133891 41142520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03416 212 524 ARID Transcription Factor Family AT1G76510 61.465 6.06e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun3g03416 HSP20 4.9e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03416 - - gmx:100803374 837.41