Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03415 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGTGGAAGAAGTTTTGGCTGAAGCACAGGTTGAACCAGAAGTTTTGGCTGCTCCTTTGTCCGTAGGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTGTGGAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATACAATAAAGTCGGTCCCTGTAATGGACAATGTTCCAGTTTTAAATAAAACCGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGATGAACTTCCTAAGAGTGATAAGGACATAGCAAATGATTCTAATGTTTGTCAAAATAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTTGAAGTGGCTGAAAGTAAAAATTGCAATAATGGTGACTCCAATTCCGCACACCCTATTCATAACGAACCTAAAACACCACATGCTGTTCAGACTGATATAAGAGCTGAAGTCAAGACTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCACATGCAGATAATGGAAACTCAATCTCACAGAACTTGTATTTTTTGGATCCTGAGTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGTTATGGAGATCTGTAAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATAATGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGGAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGTAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAAACCATCTAAACCACAATTGGACACATCTGTGATTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTGTAAGTTTATCTTGTGTTTGGATAGAATATAATCTGTTTAATTATGTAATTTACTCATCAAGAGAAAGTTGTGTACAGAAAGATTGTTTTGAGGTGTATGCATTGGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAACATTCTGATAATCCATGGGGGGTCACACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1659 0.4141 MSDTKENEEAGQNVPLAVEEVLAEAQVEPEVLAAPLSVGDTSNHAENGKVEAEAPVEDRIVKPEANSECIPQQDVLNSQNTIKSVPVMDNVPVLNKTEGENALDVKSKVDELPKSDKDIANDSNVCQNNADPAEMTVEVKPKAFEVAESKNCNNGDSNSAHPIHNEPKTPHAVQTDIRAEVKTGLDDENKYNERQAAVAHADNGNSISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNNENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVIDIGPPADWVKINVQKTVSLSCVWIEYNLFNYVIYSSRESCVQKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03415 552 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Viun3g03415 552 Gene3D - 456 552 IPR008978 -
Viun3g03415 552 CDD ARID 230 315 - -
Viun3g03415 552 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Viun3g03415 552 Gene3D - 228 326 IPR036431 GO:0003677
Viun3g03415 552 SMART bright_3 229 320 IPR001606 GO:0003677
Viun3g03415 552 CDD ACD_sHsps_p23-like 472 547 - -
Viun3g03415 552 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Viun3g03415 552 SMART ARID_2 225 315 - -
Viun3g03415 552 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Viun3g03415 552 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 457 552 IPR002068 -
Viun3g03415 552 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 551 IPR045147 GO:0006357
Viun3g03415 552 Pfam Hsp20/alpha crystallin family 470 551 IPR002068 -
Viun3g03415 552 SUPERFAMILY HSP20-like chaperones 468 548 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03415 Viun-Chr3 41133891 41142520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03415 212 550 ARID Transcription Factor Family AT1G76510 56.765 9.01e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun3g03415 HSP20 8.3e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03415 - - gmx:100803374 823.157