Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g03390 | ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTCGGTGGTTCCTATGATGAGAGAAGGTTTCTTGATGAAAGATATCCAAGAGATCCAGTTTACCAGAGAAATAATTTTCACCCTGACATTTTGGACAGGGAGGCCTACCTGCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGTGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGTCATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGCCACAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGCGAATCACGTGATAGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGACATGAGCGCTCACGCTCACGATCACATTCTCGTTCGCGTTCGCGCTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGCTCTCAGTCTCGTGGATATGATGACCATCCAAGGTCAAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAAGTGAAAGACGTAGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTCGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCTGATGGAGCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTAGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTACCGGAAAGAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTTGAAGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTTGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTGGGATGGGCTCCAAAAGAATATAACCCAGATGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCAGCAACAGCTGCTTTGGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAACAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAATCAAAAAATGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTAGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATAGTTCATCTTCAGCAAATGTTGATCCACATACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGAGTTCGTATACACCACCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAGCTCACAAAGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCTTCTTCAGTGGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCTGGAGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTTGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACGGAACATAGGGCCGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGTGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTTGCCAGATTTCGGGAGATGTCAGACAATTAA | 3210 | 0.4545 | MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAVKSGHNYKSITVPSDWMCTVCSYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKNEIMVRETNASNPGIHTTLAQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDSYSGSTSVASSMHSSSSANVDPHTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASAHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN | 1069 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g03390 | 1069 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 471 | 551 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 589 | 613 | - | - | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 229 | 255 | - | - | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 163 | 311 | - | - | |
Viun3g03390 | 1069 | CDD | RRM1_RRM2_RBM5_like | 469 | 549 | - | - | |
Viun3g03390 | 1069 | SMART | zf_4 | 418 | 442 | IPR001876 | - | |
Viun3g03390 | 1069 | Pfam | OCRE domain | 613 | 661 | IPR041591 | - | |
Viun3g03390 | 1069 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 314 | 394 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 316 | 375 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 473 | 539 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 67 | 86 | - | - | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 769 | 789 | - | - | |
Viun3g03390 | 1069 | Pfam | G-patch domain | 992 | 1033 | IPR000467 | GO:0003676 | |
Viun3g03390 | 1069 | SMART | G-patch_5 | 989 | 1035 | IPR000467 | GO:0003676 | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 130 | 149 | - | - | |
Viun3g03390 | 1069 | SUPERFAMILY | RNA-binding domain, RBD | 303 | 398 | IPR035979 | GO:0003676 | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 256 | 308 | - | - | |
Viun3g03390 | 1069 | Gene3D | - | 455 | 576 | IPR012677 | - | |
Viun3g03390 | 1069 | Gene3D | - | 279 | 413 | IPR012677 | - | |
Viun3g03390 | 1069 | ProSiteProfiles | G-patch domain profile. | 991 | 1037 | IPR000467 | GO:0003676 | |
Viun3g03390 | 1069 | SMART | rrm1_1 | 315 | 390 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | SMART | rrm1_1 | 472 | 547 | IPR000504 | GO:0003723 | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 163 | 228 | - | - | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 662 | 688 | - | - | |
Viun3g03390 | 1069 | CDD | OCRE_SUA_like | 610 | 662 | IPR035623 | - | |
Viun3g03390 | 1069 | SUPERFAMILY | RNA-binding domain, RBD | 469 | 558 | IPR035979 | GO:0003676 | |
Viun3g03390 | 1069 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 416 | 445 | IPR001876 | - | |
Viun3g03390 | 1069 | SUPERFAMILY | Ran binding protein zinc finger-like | 411 | 446 | IPR036443 | - | |
Viun3g03390 | 1069 | PANTHER | RNA-BINDING PROTEIN | 205 | 1064 | - | - | |
Viun3g03390 | 1069 | ProSitePatterns | Zinc finger RanBP2-type signature. | 420 | 439 | IPR001876 | - | |
Viun3g03390 | 1069 | MobiDBLite | consensus disorder prediction | 769 | 791 | - | - | |
Viun3g03390 | 1069 | Gene3D | - | 414 | 446 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g03390 | Viun-Chr3 | 40871264 | 40879273 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g03390 | 313 | 535 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 24.800 | 1.22e-09 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g03390 | K13094 | - | gmx:100787998 | 1737.24 |