Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03389 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGAGGCCTACCTGCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGTGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGTCATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGCCACAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGCGAATCACGTGATAGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGACATGAGCGCTCACGCTCACGATCACATTCTCGTTCGCGTTCGCGCTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGCTCTCAGTCTCGTGGATATGATGACCATCCAAGGTCAAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAAGTGAAAGACGTAGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTCGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTCTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCTGATGGAGCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTAGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTACCGGAAAGAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTTGAAGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTTGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCGGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTGGGATGGGCTCCAAAAGAATATAACCCAGATGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCAGCAACAGCTGCTTTGGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAACAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAATCAAAAAATGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTAGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATAGTTCATCTTCAGCAAATGTTGATCCACATACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGAGTTCGTATACACCACCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAGCTCACAAAGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCTTCTTCAGTGGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCTGGAGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTCGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTTGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACGGAACATAGGGCCGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGTGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTTGCCAGATTTCGGGAGATGTCAGACAATTAA 3111 0.4561 MDPGRYALHQGWDNNSALEGYGAVHEPNFREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAVKSGHNYKSITVPSDWMCTVCSYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKNEIMVRETNASNPGIHTTLAQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDSYSGSTSVASSMHSSSSANVDPHTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASAHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03389 1036 Pfam OCRE domain 580 628 IPR041591 -
Viun3g03389 1036 SUPERFAMILY Ran binding protein zinc finger-like 378 413 IPR036443 -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 29 69 - -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 47 69 - -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 223 275 - -
Viun3g03389 1036 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 440 506 IPR000504 GO:0003723
Viun3g03389 1036 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 342 IPR000504 GO:0003723
Viun3g03389 1036 MobiDBLite consensus disorder prediction 736 758 - -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 196 222 - -
Viun3g03389 1036 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 438 518 IPR000504 GO:0003723
Viun3g03389 1036 PANTHER RNA-BINDING PROTEIN 172 1031 - -
Viun3g03389 1036 Pfam G-patch domain 959 1000 IPR000467 GO:0003676
Viun3g03389 1036 SMART rrm1_1 282 357 IPR000504 GO:0003723
Viun3g03389 1036 SMART rrm1_1 439 514 IPR000504 GO:0003723
Viun3g03389 1036 MobiDBLite consensus disorder prediction 629 655 - -
Viun3g03389 1036 SUPERFAMILY RNA-binding domain, RBD 270 365 IPR035979 GO:0003676
Viun3g03389 1036 MobiDBLite consensus disorder prediction 106 195 - -
Viun3g03389 1036 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 361 IPR000504 GO:0003723
Viun3g03389 1036 CDD RRM1_RRM2_RBM5_like 436 516 - -
Viun3g03389 1036 Gene3D - 381 413 - -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 736 756 - -
Viun3g03389 1036 ProSiteProfiles G-patch domain profile. 958 1004 IPR000467 GO:0003676
Viun3g03389 1036 SUPERFAMILY RNA-binding domain, RBD 436 525 IPR035979 GO:0003676
Viun3g03389 1036 SMART zf_4 385 409 IPR001876 -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 556 580 - -
Viun3g03389 1036 CDD OCRE_SUA_like 577 629 IPR035623 -
Viun3g03389 1036 MobiDBLite consensus disorder prediction 93 278 - -
Viun3g03389 1036 ProSiteProfiles Zinc finger RanBP2 type profile. 383 412 IPR001876 -
Viun3g03389 1036 Gene3D - 246 380 IPR012677 -
Viun3g03389 1036 Gene3D - 422 543 IPR012677 -
Viun3g03389 1036 ProSitePatterns Zinc finger RanBP2-type signature. 387 406 IPR001876 -
Viun3g03389 1036 SMART G-patch_5 956 1002 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03389 Viun-Chr3 40871262 40879273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03389 280 502 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.14e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03389 K13094 - gmx:100787998 1656.34