Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03387 ATGGAAGGAGAAGACCAAGAGAAGGAAAATCGAGGGTATGTTCGTGGGGAAGGAGAAGGGTTAGAGGGCAATGGAGGAGGTGTTAACTGCAATGAGATTCGTTCTTTCACGTGCGATATCTGCAACAAAGGTTTCAGTTCAGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTCTCGAGAAAACGTGTTCATGGGGAGAAGCAAAGCACCGGTGATGCTGCAAAATCCAAGGCAGCGAAATGGGGGATGGTGGATGGCAACCCCACATGTTCCGTTTGTGGAAAGGTCTTTTCTTCCAGGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGGCGAAGAGGGGAATTCAGAGCAACGCTTTGATCGTTGGTGCGTCCTCCAATTCCACTTCTTCCTCAACGCTTTCTGATGATTTGGCTGCTGATCTCTCTGGGGTTCTCAGGAGTTGGTCTGTGACGGCCAAGAGGGGCCGCAAAAGCTCTTCTTGCAGCAAATCAGATTCTGGTTTGGAAGAAGGTGATGATGAGATTGATCCACGTATGGAAGAGGCTGCGTGTGAGCTCTTGTTGCTGGCCAGAGGGAGACCGAAGTGCGTGGAAGATCAGATTCAAGAACATCCATTCAACAAGAGGAAGGGGTGTGAAGAGGCGCTGTTACAACCAATTTTGGGGAATTCTGATGACGTGAAGATCAAGAAGAGAAATAGAAAGAAGCTGAAATTAACAGAATTAGCATCAACTGGGGAAGGGAAGAACAAGTTCTCTATATGCAGAAAATGCAATACAACTTTCCCATGTCACCAATCTTTGAAAGATCATCTATGCAGCCTTGAAAATTCCAAGAACATTCAGTCTCGGTCAGATGGTGTATCAGCCACAAAAGAGGACATACAAGGGGAGAAAACAGGAGCAGGAACTGTGGAAGGCACGAGAGGGTATGAGTGTGGAGTTTTGAACAAGACTTTCTCAACTGGTCAAGCCATTGGGGACCACAAAAGATCTGATTGGACCAGCATGGCCCAGGCAACAACTTATTCAAACATGGAAATTGCTGAGAATTGTTCCAAGGTTCTGAGTTTTGATCTCAATCAGATTCCTGCTGTGGATGGGGAAGAGGGTGTTCAATCAGATTTGTTTATTCCTGCCAACATTATGACATCATCCAGTTATGATTCCTGTTGCTAA 1197 0.4628 MEGEDQEKENRGYVRGEGEGLEGNGGGVNCNEIRSFTCDICNKGFSSGKALGGHMRIHNLSRKRVHGEKQSTGDAAKSKAAKWGMVDGNPTCSVCGKVFSSRKSLFGHMRSHTEKAKRGIQSNALIVGASSNSTSSSTLSDDLAADLSGVLRSWSVTAKRGRKSSSCSKSDSGLEEGDDEIDPRMEEAACELLLLARGRPKCVEDQIQEHPFNKRKGCEEALLQPILGNSDDVKIKKRNRKKLKLTELASTGEGKNKFSICRKCNTTFPCHQSLKDHLCSLENSKNIQSRSDGVSATKEDIQGEKTGAGTVEGTRGYECGVLNKTFSTGQAIGDHKRSDWTSMAQATTYSNMEIAENCSKVLSFDLNQIPAVDGEEGVQSDLFIPANIMTSSSYDSCC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03387 398 Gene3D Classic Zinc Finger 28 88 - -
Viun3g03387 398 Gene3D Classic Zinc Finger 91 142 - -
Viun3g03387 398 FunFam Zinc finger protein 34 59 - -
Viun3g03387 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Viun3g03387 398 SMART c2h2final6 36 58 IPR013087 -
Viun3g03387 398 SMART c2h2final6 90 112 IPR013087 -
Viun3g03387 398 Pfam C2H2-type zinc finger 92 113 - -
Viun3g03387 398 Pfam C2H2-type zinc finger 36 58 - -
Viun3g03387 398 Pfam C2H2-type zinc finger 317 338 - -
Viun3g03387 398 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Viun3g03387 398 SUPERFAMILY beta-beta-alpha zinc fingers 34 112 IPR036236 -
Viun3g03387 398 FunFam Zinc finger protein 560 91 115 - -
Viun3g03387 398 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 167 373 IPR044653 GO:0003700
Viun3g03387 398 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Viun3g03387 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03387 34 122 C2H2 Transcription Factor Family AT2G26940 35.135 2.37e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g03387 zf-C2H2_6 2.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03387 - - vra:106765955 577.4