Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03372 ATGGAGAAACAGAAAGTGTCTACAAAGCATGATTCTGATGGCAGCAGTGATCAAGCAGATTCATTTCCAATATTTGAATTGCGCGAGAGTCAAAATGTTGGACAGCAGAGGATCAGAAGAGAGGAAGATGATACAAAAGCTGTGAGATTCGATGGAGCTTCTGCAATTTCTTCCTCTAATTCTGCAAACAAGTGGATGGCATTTGCTAGGGACCCTGGTGCTGCAGTTGATAGCAACTCAGCAACAAATGATAAAAGAACAAGTGAAGAAAATTACTTGGGGAATCATCTGAAGGACAAGTCTTCTTCTGATCAACAAGTTTTAACTGAAGCAAACATAGCTGAAAGAACTGCTGAATGGGGTCTTGTGGTGAACTCTGGGAACTTCAAAACCAGTGCCTCTTTTGATGGTGACAGAGCCAGAAACTTATCAGATAGATTTGCTGAATCAACAAGGACTTCTGGGGATTCAAATTTTGGATCTGAGTCATCATCAGGGGTGTTAAGGGTGTCACAAGAGTTGAGGGATGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCTGATGCAACTAAACCAGACTGTCCAATCATGTATGCCAGTAGTGGTTTTTTCACCATGACTGGCTATTCTTCTAAGGAGATTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGATACAGACAAGAATGAAGTGGCGAAAATTCGGGATGCAACTAGAAATGGAAGAAGTTATTGTGGCAGACTATTAAACTACAAGAAAAATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAAAGATAACCAAGGCAATACTATCAAATTCATCGGAATGCAGGTTGAGGTGAGCAAGTACACTGAAGGAGTGAATGAAAAGGCGTTACGACCAAATGGATTACCCAAGTCATTAATTCGATATGATGCTCGTCAAAAGGAAAAAGCTTTGGGTTCCATCACCGAGGTTGTGCAAACTGTTAAGGACCCAAAATCTATTATTAGTAATAGGAGTGATGATACTGCCTCCATGCAAGAAGTGGAACAGAAAATGAACCTTGATTTTGTTTTGCCGAAGTCTGCTGTTGCTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTTAACATCCCACGAATAAGTTCTAATCAGGAAAAGATCAGAACATCACGATCAGGACGGATTTCTCTCAAGGGTCTTAAAGGGAAATCTCAGAGTTATGGTGGGAGAGATGAGGAGAAGTACGTTGTTGAACCTGAGGTTTTGATGACCAAAGAAATAGAGTGGTCGAACAATTTGGAGAACTCACTGAGAGAAAGGGACATGAGGCAAGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAACTTCGTGATTTCTGATCCTAGACTGCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAGCTTACAGAATATACACGAGAAGAAATTCTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCTAAGATAAGGGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGCGAACTTCAATACTTCATTGGCGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCTTGTCTGAGACAACTGAGCTACAGAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTGGATGAAGCTGTCCGAGAACTTCCCGATGCCAACTTGAGGCCAGAAGATTTGTGGGCAGTTCATTCCCAACCTGTCTATCCACGACCTCACAGAAAGGATAATCCTTCTTGGATAGCAATACAAAAGGTTACTGCAAGAGGCGAAAAAATTGGTCTGCAACATTTTGTGCCCATAAGGCCACTAGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGCACTGGTGAACTATATGCAATGAAAGCAATGGAAAAGTCTGTCATGCTAAATCGTAATAAGGTTCACCGGTCATGCATTGAGAGAGAGATTATATCATTATTGGATCACCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTTCTGACTTCTGCCACGGAGGAGAATTATTTGCATTGCTTGACAGACAACCAATGAAGATTTTCAGAGAAGAATCAGCAAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTTTCTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAACTGACTTTGATCTATCATCTATGACATCGTGTAAACCCCAGGTTGTGAAGCAAGCATTACCTGGTAAAAGAAGAAAATCACGAAGTGAACCACCACCAATACTTGTTGCAGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTGCCCCTGAAATTATAACTGGAGCTGGGCATACTAGCGCTATAGATTGGTGGACCCTTGGTATCTTATTGTATGAGATGCTGTATGGTCGTACACCATTTAGAGGAAAGAACAGACAGAGGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGACAGTTGATTAATGCACTACTGCAGAGAGATCCAACAAGTCGTCTAGGTTCAACCACTGGTGCAAATGAAATCAAACAACACCCTTTTTTCCGTGGAATCAATTGGCCTCTAATCCGCAACATGACTCCACCTCCATTAGATGTTCCTCTAAAACTGATAGGAAAAGATCCAGTGGCGAAGGATATAAAATGGGAAGATGATGGAGTGCTAGCTAGCTCCATTGATATGGATATTTTTTGA 2955 0.4142 MEKQKVSTKHDSDGSSDQADSFPIFELRESQNVGQQRIRREEDDTKAVRFDGASAISSSNSANKWMAFARDPGAAVDSNSATNDKRTSEENYLGNHLKDKSSSDQQVLTEANIAERTAEWGLVVNSGNFKTSASFDGDRARNLSDRFAESTRTSGDSNFGSESSSGVLRVSQELRDALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPDTDKNEVAKIRDATRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDNQGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIISNRSDDTASMQEVEQKMNLDFVLPKSAVAGNTSTPGRQPSPLNIPRISSNQEKIRTSRSGRISLKGLKGKSQSYGGRDEEKYVVEPEVLMTKEIEWSNNLENSLRERDMRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTELQSAKLVKATAENVDEAVRELPDANLRPEDLWAVHSQPVYPRPHRKDNPSWIAIQKVTARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLISDFCHGGELFALLDRQPMKIFREESARFYAAEVVIGLEYLHFLGIIYRDLKPENILLQKDGHVVLTDFDLSSMTSCKPQVVKQALPGKRRKSRSEPPPILVAEPITQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQRTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLKLIGKDPVAKDIKWEDDGVLASSIDMDIF 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03372 984 ProSiteProfiles PAS repeat profile. 170 243 IPR000014 -
Viun3g03372 984 Pfam Protein kinase domain 651 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03372 984 CDD STKc_phototropin_like 646 958 - -
Viun3g03372 984 FunFam Putative LOV domain-containing protein 184 340 - -
Viun3g03372 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Viun3g03372 984 ProSiteProfiles PAC domain profile. 244 298 IPR000700 -
Viun3g03372 984 SMART serkin_6 648 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03372 984 FunFam LOV domain-containing protein 647 731 - -
Viun3g03372 984 ProSiteProfiles PAC domain profile. 521 575 IPR000700 -
Viun3g03372 984 MobiDBLite consensus disorder prediction 1 16 - -
Viun3g03372 984 FunFam Putative LOV domain-containing protein 732 947 - -
Viun3g03372 984 CDD PAS 470 562 IPR000014 -
Viun3g03372 984 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
Viun3g03372 984 ProSiteProfiles Protein kinase domain profile. 648 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g03372 984 SMART pac_2 524 566 IPR001610 -
Viun3g03372 984 SMART pac_2 247 289 IPR001610 -
Viun3g03372 984 Gene3D PAS domain 436 600 - -
Viun3g03372 984 PANTHER FLIPPASE KINASE 1-RELATED 119 951 - -
Viun3g03372 984 SUPERFAMILY PYP-like sensor domain (PAS domain) 191 283 IPR035965 -
Viun3g03372 984 Pfam PAS domain 191 287 IPR000014 -
Viun3g03372 984 Pfam PAS domain 470 562 IPR000014 -
Viun3g03372 984 ProSiteProfiles PAS repeat profile. 447 520 IPR000014 -
Viun3g03372 984 NCBIfam PAS domain S-box protein 473 564 IPR000014 -
Viun3g03372 984 NCBIfam PAS domain S-box protein 196 287 IPR000014 -
Viun3g03372 984 CDD PAS 197 286 IPR000014 -
Viun3g03372 984 Gene3D Phosphorylase Kinase; domain 1 647 731 - -
Viun3g03372 984 FunFam LOV domain-containing protein 436 600 - -
Viun3g03372 984 Gene3D Transferase(Phosphotransferase) domain 1 732 950 - -
Viun3g03372 984 SUPERFAMILY Protein kinase-like (PK-like) 623 959 IPR011009 -
Viun3g03372 984 MobiDBLite consensus disorder prediction 1 45 - -
Viun3g03372 984 Gene3D PAS domain 184 356 - -
Viun3g03372 984 SMART pas_2 172 241 IPR000014 -
Viun3g03372 984 SMART pas_2 449 518 IPR000014 -
Viun3g03372 984 SUPERFAMILY PYP-like sensor domain (PAS domain) 466 562 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03372 Viun-Chr3 40676510 40686845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03372 71 983 AGC Kinase Gene Family AT5G58140 72.048 0.0 1312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun3g03372 Pkinase 1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03372 K20715 - gmx:100804783 1706.42