Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03365 ATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGGAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTCAGTCCAGCCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGTAAACTTCCGGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTCGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGACTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATTTTGTCTGGTCCTTCTGGTCCACCGTTAACATCCGTGCCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTCGAACAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAATCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTTCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGCGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAACGACTTGTACCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTGAAAGTTTTGCAAGTTTGGGCGGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAAGTCCATTCCATTCTATATGCGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGCAAGTATTCAGGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTGCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCCGTATCTATAGCCTCTACACTTCCTATTCCACAGCCTGAACTTAAGGCCTTCACAAAAAAGGAAAAGAGCGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAAAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTTAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATAGAAGAACTACAGAGAGGAGGGATAGGCATGACGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGGGACAAAAGTTATGATTTTGATATTGAAAGAGGAAAAGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2544 0.443 MEELKHEQEMRERRNQEREHWRDGRHAEHSAQSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRTVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVSPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSGNRQETSAEPEPVGLSAWNHYGDEDLPSQSRSSVSIASTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKSNRRTTERRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQRDKSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03365 847 SMART 558neu5 325 460 IPR006569 -
Viun3g03365 847 SMART rrm1_1 62 138 IPR000504 GO:0003723
Viun3g03365 847 Gene3D - 318 464 IPR008942 -
Viun3g03365 847 Coils Coil 721 741 - -
Viun3g03365 847 ProSiteProfiles SAP motif profile. 512 546 IPR003034 -
Viun3g03365 847 Pfam Surp module 208 260 IPR000061 GO:0003723|GO:0006396
Viun3g03365 847 Gene3D - 694 745 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 567 608 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 718 764 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g03365 847 SUPERFAMILY ENTH/VHS domain 322 459 IPR008942 -
Viun3g03365 847 Gene3D Surp module 196 265 IPR035967 GO:0003723|GO:0006396
Viun3g03365 847 MobiDBLite consensus disorder prediction 718 847 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 1 58 - -
Viun3g03365 847 CDD RRM_SR140 60 143 IPR035009 -
Viun3g03365 847 ProSiteProfiles SURP motif repeat profile. 210 253 IPR000061 GO:0003723|GO:0006396
Viun3g03365 847 SMART cwf21_2 694 743 IPR013170 -
Viun3g03365 847 MobiDBLite consensus disorder prediction 292 318 - -
Viun3g03365 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 142 IPR000504 GO:0003723
Viun3g03365 847 MobiDBLite consensus disorder prediction 771 840 - -
Viun3g03365 847 SUPERFAMILY Surp module (SWAP domain) 184 265 IPR035967 GO:0003723|GO:0006396
Viun3g03365 847 MobiDBLite consensus disorder prediction 285 318 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 621 653 - -
Viun3g03365 847 Coils Coil 323 343 - -
Viun3g03365 847 ProSiteProfiles CID domain profile. 318 463 IPR006569 -
Viun3g03365 847 Gene3D - 1 144 IPR012677 -
Viun3g03365 847 SMART surpneu2 208 262 IPR000061 GO:0003723|GO:0006396
Viun3g03365 847 MobiDBLite consensus disorder prediction 620 699 - -
Viun3g03365 847 Pfam CID domain 325 453 IPR006569 -
Viun3g03365 847 CDD cwf21_RRC1-like 694 743 IPR047491 -
Viun3g03365 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 135 IPR000504 GO:0003723
Viun3g03365 847 Pfam cwf21 domain 695 741 IPR013170 -
Viun3g03365 847 Coils Coil 695 715 - -
Viun3g03365 847 SUPERFAMILY RNA-binding domain, RBD 54 148 IPR035979 GO:0003676
Viun3g03365 847 PANTHER RNA PROCESSING PROTEIN LD23810P 1 779 - -
Viun3g03365 847 MobiDBLite consensus disorder prediction 567 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03365 Viun-Chr3 40623722 40641825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03365 58 138 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.29e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03365 K12842 - gmx:100776093 1518.44