Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03364 ATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGGAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTTCCAGCCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGTAAACTTCCGGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTCGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGACTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATTTTGTCTGGTCCTTCTGGTCCACCGTTAACATCCGTGCCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTCGAACAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAATCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTTCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGCGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAACGACTTGTACCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTGAAAGTTTTGCAAGTTTGGGCGGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAAGTCCATTCCATTCTATATGCGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGCAAGTATTCAGGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTGCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCCGTATCTATAGCCTCTACACTTCCTATTCCACAGCCTGAACTTAAGGCCTTCACAAAAAAGGAAAAGAGCGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAAAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTTAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATAGAAGAACTACAGAGAGGAGGGATAGGCATGACGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGGGACAAAAGTTATGATTTTGATATTGAAAGAGGAAAAGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2541 0.4427 MEELKHEQEMRERRNQEREHWRDGRHAEHSASSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRTVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVSPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSGNRQETSAEPEPVGLSAWNHYGDEDLPSQSRSSVSIASTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKSNRRTTERRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQRDKSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03364 846 Coils Coil 322 342 - -
Viun3g03364 846 ProSiteProfiles SURP motif repeat profile. 209 252 IPR000061 GO:0003723|GO:0006396
Viun3g03364 846 CDD RRM_SR140 59 142 IPR035009 -
Viun3g03364 846 MobiDBLite consensus disorder prediction 284 317 - -
Viun3g03364 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 141 IPR000504 GO:0003723
Viun3g03364 846 ProSiteProfiles SAP motif profile. 511 545 IPR003034 -
Viun3g03364 846 Gene3D - 693 744 - -
Viun3g03364 846 SMART cwf21_2 693 742 IPR013170 -
Viun3g03364 846 MobiDBLite consensus disorder prediction 620 652 - -
Viun3g03364 846 Coils Coil 694 714 - -
Viun3g03364 846 MobiDBLite consensus disorder prediction 1 43 - -
Viun3g03364 846 MobiDBLite consensus disorder prediction 619 698 - -
Viun3g03364 846 MobiDBLite consensus disorder prediction 1 57 - -
Viun3g03364 846 SUPERFAMILY Surp module (SWAP domain) 183 264 IPR035967 GO:0003723|GO:0006396
Viun3g03364 846 Gene3D - 1 143 IPR012677 -
Viun3g03364 846 Gene3D Surp module 195 264 IPR035967 GO:0003723|GO:0006396
Viun3g03364 846 ProSiteProfiles CID domain profile. 317 462 IPR006569 -
Viun3g03364 846 MobiDBLite consensus disorder prediction 717 763 - -
Viun3g03364 846 Gene3D - 317 463 IPR008942 -
Viun3g03364 846 SMART 558neu5 324 459 IPR006569 -
Viun3g03364 846 MobiDBLite consensus disorder prediction 566 581 - -
Viun3g03364 846 MobiDBLite consensus disorder prediction 717 846 - -
Viun3g03364 846 SUPERFAMILY RNA-binding domain, RBD 53 147 IPR035979 GO:0003676
Viun3g03364 846 Coils Coil 720 740 - -
Viun3g03364 846 SUPERFAMILY ENTH/VHS domain 321 458 IPR008942 -
Viun3g03364 846 CDD cwf21_RRC1-like 693 742 IPR047491 -
Viun3g03364 846 SMART surpneu2 207 261 IPR000061 GO:0003723|GO:0006396
Viun3g03364 846 MobiDBLite consensus disorder prediction 566 607 - -
Viun3g03364 846 Pfam cwf21 domain 694 740 IPR013170 -
Viun3g03364 846 MobiDBLite consensus disorder prediction 291 317 - -
Viun3g03364 846 MobiDBLite consensus disorder prediction 770 839 - -
Viun3g03364 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 134 IPR000504 GO:0003723
Viun3g03364 846 SMART rrm1_1 61 137 IPR000504 GO:0003723
Viun3g03364 846 Pfam Surp module 207 259 IPR000061 GO:0003723|GO:0006396
Viun3g03364 846 Pfam CID domain 324 452 IPR006569 -
Viun3g03364 846 PANTHER RNA PROCESSING PROTEIN LD23810P 1 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03364 Viun-Chr3 40623722 40642001 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03364 57 137 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.33e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03364 K12842 - gmx:100776093 1523.06