Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03358 ATGAGTTCATTCTCCATCACAAGGAAAAAGACACCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGATTGTACGCTGAGTTTGTAGAGTCATTTCAAGGAGACACTACTCCGGGGTCAAAAACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATTGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAAGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGGAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTCAGTCCAGCCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGTAAACTTCCGGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTCGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGACTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATTTTGTCTGGTCCTTCTGGTCCACCGTTAACATCCGTGCCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTCGAACAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAATCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTTCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGCGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAACGACTTGTACCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTGAAAGTTTTGCAAGTTTGGGCGGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAAGTCCATTCCATTCTATATGCGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGCAAGTATTCAGGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTGCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCCGTATCTATAGCCTCTACACTTCCTATTCCACAGCCTGAACTTAAGGCCTTCACAAAAAAGGAAAAGAGCGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAAAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTTAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGAAGAACTACAGAGAGGAGGGATAGGCATGACGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGGGACAAAAGTTATGATTTTGATATTGAAAGAGGAAAAGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2916 0.4386 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSVPKKGSRYVPSFIPPPIATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSAQSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRTVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVSPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSGNRQETSAEPEPVGLSAWNHYGDEDLPSQSRSSVSIASTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKRRTTERRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQRDKSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03358 971 CDD cwf21_RRC1-like 820 869 IPR047491 -
Viun3g03358 971 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Viun3g03358 971 MobiDBLite consensus disorder prediction 747 779 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 895 964 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 11 35 - -
Viun3g03358 971 Pfam CID domain 451 579 IPR006569 -
Viun3g03358 971 MobiDBLite consensus disorder prediction 411 444 - -
Viun3g03358 971 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Viun3g03358 971 MobiDBLite consensus disorder prediction 1 186 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 844 888 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 43 57 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 418 444 - -
Viun3g03358 971 Gene3D - 97 270 IPR012677 -
Viun3g03358 971 SMART 558neu5 451 586 IPR006569 -
Viun3g03358 971 MobiDBLite consensus disorder prediction 844 971 - -
Viun3g03358 971 Pfam cwf21 domain 821 867 IPR013170 -
Viun3g03358 971 SUPERFAMILY ENTH/VHS domain 448 585 IPR008942 -
Viun3g03358 971 Coils Coil 821 841 - -
Viun3g03358 971 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Viun3g03358 971 MobiDBLite consensus disorder prediction 693 734 - -
Viun3g03358 971 Pfam Surp module 334 386 IPR000061 GO:0003723|GO:0006396
Viun3g03358 971 Coils Coil 17 37 - -
Viun3g03358 971 MobiDBLite consensus disorder prediction 61 80 - -
Viun3g03358 971 CDD RRM_SR140 186 269 IPR035009 -
Viun3g03358 971 SMART cwf21_2 820 869 IPR013170 -
Viun3g03358 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 261 IPR000504 GO:0003723
Viun3g03358 971 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Viun3g03358 971 MobiDBLite consensus disorder prediction 99 170 - -
Viun3g03358 971 Coils Coil 449 469 - -
Viun3g03358 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 268 IPR000504 GO:0003723
Viun3g03358 971 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Viun3g03358 971 Coils Coil 847 867 - -
Viun3g03358 971 Gene3D - 820 871 - -
Viun3g03358 971 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Viun3g03358 971 SUPERFAMILY RNA-binding domain, RBD 180 274 IPR035979 GO:0003676
Viun3g03358 971 Gene3D - 444 590 IPR008942 -
Viun3g03358 971 MobiDBLite consensus disorder prediction 693 708 - -
Viun3g03358 971 PANTHER RNA PROCESSING PROTEIN LD23810P 1 903 - -
Viun3g03358 971 SMART rrm1_1 188 264 IPR000504 GO:0003723
Viun3g03358 971 MobiDBLite consensus disorder prediction 746 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03358 Viun-Chr3 40623722 40642882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03358 187 256 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 3.35e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03358 K12842 - gmx:100776093 1720.29