Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03357 ATGAGTTCATTCTCCATCACAAGGAAAAAGACACCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGATTGTACGCTGAGTTTGTAGAGTCATTTCAAGGAGACACTACTCCGGGGTCAAAAACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATTGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAAGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGGAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTTCCAGCCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGTAAACTTCCGGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTCGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGACTGTTGCCCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATTTTGTCTGGTCCTTCTGGTCCACCGTTAACATCCGTGCCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTCGAACAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAGGAATCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTTCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGCGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAACGACTTGTACCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTGAAAGTTTTGCAAGTTTGGGCGGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAAGTCCATTCCATTCTATATGCGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGCAAGTATTCAGGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTGCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCCGTATCTATAGCCTCTACACTTCCTATTCCACAGCCTGAACTTAAGGCCTTCACAAAAAAGGAAAAGAGCGATCCAGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAAAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTTAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATCGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATAGAAGAACTACAGAGAGGAGGGATAGGCATGACGTCTCAAGGAAACGGCACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGGGACAAAAGTTATGATTTTGATATTGAAAGAGGAAAAGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA 2919 0.4378 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSVPKKGSRYVPSFIPPPIATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSASSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRTVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVSPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSGNRQETSAEPEPVGLSAWNHYGDEDLPSQSRSSVSIASTLPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKSNRRTTERRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQRDKSYDFDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03357 972 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Viun3g03357 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Viun3g03357 972 SUPERFAMILY RNA-binding domain, RBD 179 273 IPR035979 GO:0003676
Viun3g03357 972 Gene3D - 819 870 - -
Viun3g03357 972 Coils Coil 820 840 - -
Viun3g03357 972 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Viun3g03357 972 MobiDBLite consensus disorder prediction 11 35 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 692 707 - -
Viun3g03357 972 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Viun3g03357 972 CDD RRM_SR140 185 268 IPR035009 -
Viun3g03357 972 Pfam cwf21 domain 820 866 IPR013170 -
Viun3g03357 972 MobiDBLite consensus disorder prediction 43 57 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 843 889 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 745 824 - -
Viun3g03357 972 Coils Coil 448 468 - -
Viun3g03357 972 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Viun3g03357 972 Coils Coil 846 866 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 746 778 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 843 972 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 896 965 - -
Viun3g03357 972 Coils Coil 17 37 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 61 80 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 410 443 - -
Viun3g03357 972 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Viun3g03357 972 SMART rrm1_1 187 263 IPR000504 GO:0003723
Viun3g03357 972 Pfam CID domain 450 578 IPR006569 -
Viun3g03357 972 SMART 558neu5 450 585 IPR006569 -
Viun3g03357 972 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Viun3g03357 972 MobiDBLite consensus disorder prediction 417 443 - -
Viun3g03357 972 Gene3D - 97 269 IPR012677 -
Viun3g03357 972 PANTHER RNA PROCESSING PROTEIN LD23810P 1 904 - -
Viun3g03357 972 CDD cwf21_RRC1-like 819 868 IPR047491 -
Viun3g03357 972 SMART cwf21_2 819 868 IPR013170 -
Viun3g03357 972 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Viun3g03357 972 Gene3D - 443 589 IPR008942 -
Viun3g03357 972 MobiDBLite consensus disorder prediction 1 183 - -
Viun3g03357 972 MobiDBLite consensus disorder prediction 692 733 - -
Viun3g03357 972 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Viun3g03357 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Viun3g03357 972 MobiDBLite consensus disorder prediction 99 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03357 Viun-Chr3 40623722 40642882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03357 186 255 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 3.47e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03357 K12842 - gmx:100776093 1732.23